Cluster: HRGMv2_3169_CGC3
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3169
- CGC Family ID: CGCFAM_10316
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3169_1 | HRGMv2_3169_1_191 | 201323 | 201871 | + | 2.A.102.4.4 |
| pfam | HRGMv2_3169_1 | HRGMv2_3169_1_192 | 201885 | 202997 | + | Radical_SAM | SPASM | Fer4_12 |
| CAZyme | HRGMv2_3169_1 | HRGMv2_3169_1_193 | 203171 | 204001 | - | GT8 |
| pfam | HRGMv2_3169_1 | HRGMv2_3169_1_194 | 204020 | 204562 | - | DUF308 | DUF308 |
| TC | HRGMv2_3169_1 | HRGMv2_3169_1_195 | 204559 | 206388 | - | 3.A.16.1.1 |
Gene ID: HRGMv2_3169_1_191
Type: TC
Location: 201323 - 201871 (+)
Type: TC
Location: 201323 - 201871 (+)
Gene ID: HRGMv2_3169_1_192
Type: pfam
Location: 201885 - 202997 (+)
Type: pfam
Location: 201885 - 202997 (+)
Gene ID: HRGMv2_3169_1_193
Type: CAZyme
Location: 203171 - 204001 (-)
Type: CAZyme
Location: 203171 - 204001 (-)
Gene ID: HRGMv2_3169_1_194
Type: pfam
Location: 204020 - 204562 (-)
Type: pfam
Location: 204020 - 204562 (-)
Gene ID: HRGMv2_3169_1_195
Type: TC
Location: 204559 - 206388 (-)
Type: TC
Location: 204559 - 206388 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp944385175
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.