Cluster: HRGMv2_3169_CGC22
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3169
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3169_41 | HRGMv2_3169_41_2 | 1006 | 2073 | + | GT2 |
| TF | HRGMv2_3169_41 | HRGMv2_3169_41_3 | 2321 | 3019 | + | HTH_3 |
| pfam | HRGMv2_3169_41 | HRGMv2_3169_41_4 | 3264 | 3890 | + | TPK_catalytic | TPK_B1_binding |
| TC | HRGMv2_3169_41 | HRGMv2_3169_41_5 | 4023 | 5936 | + | 9.B.18.2.1 |
Gene ID: HRGMv2_3169_41_2
Type: CAZyme
Location: 1006 - 2073 (+)
Type: CAZyme
Location: 1006 - 2073 (+)
Gene ID: HRGMv2_3169_41_3
Type: TF
Location: 2321 - 3019 (+)
Type: TF
Location: 2321 - 3019 (+)
Gene ID: HRGMv2_3169_41_4
Type: pfam
Location: 3264 - 3890 (+)
Type: pfam
Location: 3264 - 3890 (+)
Gene ID: HRGMv2_3169_41_5
Type: TC
Location: 4023 - 5936 (+)
Type: TC
Location: 4023 - 5936 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp944385175
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.