Cluster: HRGMv2_3169_CGC2
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3169
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3169_1 | HRGMv2_3169_1_143 | 143482 | 144594 | + | GT2 |
| NULL(UNKNOWN) | HRGMv2_3169_1 | HRGMv2_3169_1_144 | 144825 | 146150 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| peptidase | HRGMv2_3169_1 | HRGMv2_3169_1_145 | 146484 | 147428 | - | S09.B04 |
| TC | HRGMv2_3169_1 | HRGMv2_3169_1_146 | 147507 | 148304 | - | 3.A.1.34.1 |
| TC | HRGMv2_3169_1 | HRGMv2_3169_1_147 | 148297 | 149253 | - | 3.A.1.34.1 |
Gene ID: HRGMv2_3169_1_143
Type: CAZyme
Location: 143482 - 144594 (+)
Type: CAZyme
Location: 143482 - 144594 (+)
Gene ID: HRGMv2_3169_1_144
Type:
Location: 144825 - 146150 (+)
Type:
Location: 144825 - 146150 (+)
Gene ID: HRGMv2_3169_1_145
Type: peptidase
Location: 146484 - 147428 (-)
Type: peptidase
Location: 146484 - 147428 (-)
Gene ID: HRGMv2_3169_1_146
Type: TC
Location: 147507 - 148304 (-)
Type: TC
Location: 147507 - 148304 (-)
Gene ID: HRGMv2_3169_1_147
Type: TC
Location: 148297 - 149253 (-)
Type: TC
Location: 148297 - 149253 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp944385175
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3169_1_146 | vegetarian > omnivore | 1.10333 | 0.00141 |