Cluster: HRGMv2_3169_CGC19
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3169
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3169_28 | HRGMv2_3169_28_5 | 3967 | 4740 | - | CE14 |
| TC | HRGMv2_3169_28 | HRGMv2_3169_28_6 | 4737 | 6224 | - | 2.A.2.2.3 |
| pfam | HRGMv2_3169_28 | HRGMv2_3169_28_7 | 6225 | 6761 | - | Isochorismatase |
| STP | HRGMv2_3169_28 | HRGMv2_3169_28_8 | 6794 | 7159 | - | Glyoxalase |
| CAZyme | HRGMv2_3169_28 | HRGMv2_3169_28_9 | 7327 | 8709 | + | GT4 |
Gene ID: HRGMv2_3169_28_5
Type: CAZyme
Location: 3967 - 4740 (-)
Type: CAZyme
Location: 3967 - 4740 (-)
Gene ID: HRGMv2_3169_28_6
Type: TC
Location: 4737 - 6224 (-)
Type: TC
Location: 4737 - 6224 (-)
Gene ID: HRGMv2_3169_28_7
Type: pfam
Location: 6225 - 6761 (-)
Type: pfam
Location: 6225 - 6761 (-)
Gene ID: HRGMv2_3169_28_8
Type: STP
Location: 6794 - 7159 (-)
Type: STP
Location: 6794 - 7159 (-)
Gene ID: HRGMv2_3169_28_9
Type: CAZyme
Location: 7327 - 8709 (+)
Type: CAZyme
Location: 7327 - 8709 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp944385175
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.