dbCAN HGM

Cluster: HRGMv2_3169_CGC18

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	HRGMv2_3169_17	HRGMv2_3169_17_10	11532	12650	+	3.A.1.11.8
TC	HRGMv2_3169_17	HRGMv2_3169_17_11	12647	13525	+	3.A.1.11.2
TC	HRGMv2_3169_17	HRGMv2_3169_17_12	13542	14384	+	3.A.1.11.8
TC	HRGMv2_3169_17	HRGMv2_3169_17_13	14400	15506	+	3.A.1.11.7
STP	HRGMv2_3169_17	HRGMv2_3169_17_14	15879	17264	+	PALP
CAZyme	HRGMv2_3169_17	HRGMv2_3169_17_15	17409	18593	-	GT1
TF	HRGMv2_3169_17	HRGMv2_3169_17_16	18593	18811	-	SpoVT_AbrB
TC	HRGMv2_3169_17	HRGMv2_3169_17_17	18943	19956	+	9.A.11.1.1
TC	HRGMv2_3169_17	HRGMv2_3169_17_18	19959	20330	+	9.A.11.1.1
pfam	HRGMv2_3169_17	HRGMv2_3169_17_19	20474	20908	-	HSP20
pfam	HRGMv2_3169_17	HRGMv2_3169_17_20	21091	21705	-	PseudoU_synth_2
TC	HRGMv2_3169_17	HRGMv2_3169_17_21	21921	23684	+	2.A.58.2.2

Gene ID: HRGMv2_3169_17_10
Type: TC
Location: 11532 - 12650 (+)

Gene ID: HRGMv2_3169_17_11
Type: TC
Location: 12647 - 13525 (+)

Gene ID: HRGMv2_3169_17_12
Type: TC
Location: 13542 - 14384 (+)

Gene ID: HRGMv2_3169_17_13
Type: TC
Location: 14400 - 15506 (+)

Gene ID: HRGMv2_3169_17_14
Type: STP
Location: 15879 - 17264 (+)

Gene ID: HRGMv2_3169_17_15
Type: CAZyme
Location: 17409 - 18593 (-)

Gene ID: HRGMv2_3169_17_16
Type: TF
Location: 18593 - 18811 (-)

Gene ID: HRGMv2_3169_17_17
Type: TC
Location: 18943 - 19956 (+)

Gene ID: HRGMv2_3169_17_18
Type: TC
Location: 19959 - 20330 (+)

Gene ID: HRGMv2_3169_17_19
Type: pfam
Location: 20474 - 20908 (-)

Gene ID: HRGMv2_3169_17_20
Type: pfam
Location: 21091 - 21705 (-)

Gene ID: HRGMv2_3169_17_21
Type: TC
Location: 21921 - 23684 (+)

Taxonomic Lineage

Domain

→

Phylum

→

Class

→

Order

→

Family

→

Genus

→

Species

Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_3169_17_11	vegetarian > omnivore	1.87120	0.00141
HRGMv2_3169_17_12	vegetarian > omnivore	1.14197	0.00141
HRGMv2_3169_17_13	vegetarian > omnivore	1.70565	0.00141