Cluster: HRGMv2_3169_CGC15
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3169
- CGC Family ID: CGCFAM_00591
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3169_11 | HRGMv2_3169_11_55 | 69334 | 70629 | + | 3.A.1.1.44 |
| TC | HRGMv2_3169_11 | HRGMv2_3169_11_56 | 70653 | 71555 | + | 3.A.1.1.11 |
| TC | HRGMv2_3169_11 | HRGMv2_3169_11_57 | 71568 | 72407 | + | 3.A.1.1.34 |
| CAZyme | HRGMv2_3169_11 | HRGMv2_3169_11_58 | 72583 | 74754 | + | GH36 |
| TF | HRGMv2_3169_11 | HRGMv2_3169_11_59 | 74781 | 75641 | - | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_3169_11 | HRGMv2_3169_11_60 | 75787 | 77616 | + | GH13_4 |
Gene ID: HRGMv2_3169_11_55
Type: TC
Location: 69334 - 70629 (+)
Type: TC
Location: 69334 - 70629 (+)
Gene ID: HRGMv2_3169_11_56
Type: TC
Location: 70653 - 71555 (+)
Type: TC
Location: 70653 - 71555 (+)
Gene ID: HRGMv2_3169_11_57
Type: TC
Location: 71568 - 72407 (+)
Type: TC
Location: 71568 - 72407 (+)
Gene ID: HRGMv2_3169_11_58
Type: CAZyme
Location: 72583 - 74754 (+)
Type: CAZyme
Location: 72583 - 74754 (+)
Gene ID: HRGMv2_3169_11_59
Type: TF
Location: 74781 - 75641 (-)
Type: TF
Location: 74781 - 75641 (-)
Gene ID: HRGMv2_3169_11_60
Type: CAZyme
Location: 75787 - 77616 (+)
Type: CAZyme
Location: 75787 - 77616 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp944385175
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.