Cluster: HRGMv2_3169_CGC12
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3169
- CGC Family ID: CGCFAM_06189
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3169_8 | HRGMv2_3169_8_59 | 58012 | 59922 | - | 3.A.3.6.16 |
| pfam | HRGMv2_3169_8 | HRGMv2_3169_8_60 | 60055 | 60330 | - | Trns_repr_metal |
| pfam | HRGMv2_3169_8 | HRGMv2_3169_8_61 | 60888 | 61868 | - | Asn_synthase | GMP_synt_C | NAD_synthase | tRNA_Me_trans |
| CAZyme | HRGMv2_3169_8 | HRGMv2_3169_8_62 | 61923 | 63209 | - | GH13 |
| TC | HRGMv2_3169_8 | HRGMv2_3169_8_63 | 63407 | 65170 | + | 2.A.58.2.2 |
Gene ID: HRGMv2_3169_8_59
Type: TC
Location: 58012 - 59922 (-)
Type: TC
Location: 58012 - 59922 (-)
Gene ID: HRGMv2_3169_8_60
Type: pfam
Location: 60055 - 60330 (-)
Type: pfam
Location: 60055 - 60330 (-)
Gene ID: HRGMv2_3169_8_61
Type: pfam
Location: 60888 - 61868 (-)
Type: pfam
Location: 60888 - 61868 (-)
Gene ID: HRGMv2_3169_8_62
Type: CAZyme
Location: 61923 - 63209 (-)
Type: CAZyme
Location: 61923 - 63209 (-)
Gene ID: HRGMv2_3169_8_63
Type: TC
Location: 63407 - 65170 (+)
Type: TC
Location: 63407 - 65170 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp944385175
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.