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Cluster: HRGMv2_3160_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3160_16 HRGMv2_3160_16_2 138 2111 - GH13_14
pfam HRGMv2_3160_16 HRGMv2_3160_16_3 2159 3046 - PS_Dcarbxylase
pfam HRGMv2_3160_16 HRGMv2_3160_16_4 3074 3715 - CDP-OH_P_transf
TC HRGMv2_3160_16 HRGMv2_3160_16_5 3728 4702 - 9.B.146.1.3
TC HRGMv2_3160_16 HRGMv2_3160_16_6 4894 5325 + 1.A.22.1.3
TF HRGMv2_3160_16 HRGMv2_3160_16_7 5583 6122 + SpoVT_AbrB
TC HRGMv2_3160_16 HRGMv2_3160_16_8 6353 7732 + 2.A.6.4.2
TC HRGMv2_3160_16 HRGMv2_3160_16_9 7725 8735 + 2.A.6.4.2
NULL(UNKNOWN) HRGMv2_3160_16 HRGMv2_3160_16_10 8808 9308 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3160_16 HRGMv2_3160_16_11 9390 9836 - 9.A.11.1.1
TC HRGMv2_3160_16 HRGMv2_3160_16_12 10072 10707 + 2.A.115.2.14
Gene ID: HRGMv2_3160_16_2
Type: CAZyme
Location: 138 - 2111 (-)
Gene ID: HRGMv2_3160_16_3
Type: pfam
Location: 2159 - 3046 (-)
Gene ID: HRGMv2_3160_16_4
Type: pfam
Location: 3074 - 3715 (-)
Gene ID: HRGMv2_3160_16_5
Type: TC
Location: 3728 - 4702 (-)
Gene ID: HRGMv2_3160_16_6
Type: TC
Location: 4894 - 5325 (+)
Gene ID: HRGMv2_3160_16_7
Type: TF
Location: 5583 - 6122 (+)
Gene ID: HRGMv2_3160_16_8
Type: TC
Location: 6353 - 7732 (+)
Gene ID: HRGMv2_3160_16_9
Type: TC
Location: 7725 - 8735 (+)
Gene ID: HRGMv2_3160_16_10
Type:
Location: 8808 - 9308 (-)
Gene ID: HRGMv2_3160_16_11
Type: TC
Location: 9390 - 9836 (-)
Gene ID: HRGMv2_3160_16_12
Type: TC
Location: 10072 - 10707 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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