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Cluster: HRGMv2_3160_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3160_5 HRGMv2_3160_5_23 20482 22764 - GH3
pfam HRGMv2_3160_5 HRGMv2_3160_5_24 22754 23191 - DUF188
CAZyme HRGMv2_3160_5 HRGMv2_3160_5_25 23590 25935 + GH31_3
pfam HRGMv2_3160_5 HRGMv2_3160_5_26 26036 26557 + Acetyltransf_1 | FR47 | Acetyltransf_4 | Acetyltransf_7 | Acetyltransf_10
STP HRGMv2_3160_5 HRGMv2_3160_5_27 26658 27626 - PfkB
CAZyme HRGMv2_3160_5 HRGMv2_3160_5_28 27652 29847 - GH36
CAZyme HRGMv2_3160_5 HRGMv2_3160_5_29 29873 31285 - GH13_18
TC HRGMv2_3160_5 HRGMv2_3160_5_30 31319 32221 - 3.A.1.1.28
TC HRGMv2_3160_5 HRGMv2_3160_5_31 32218 33099 - 3.A.1.1.28
TC HRGMv2_3160_5 HRGMv2_3160_5_32 33099 34388 - 3.A.1.1.28
Gene ID: HRGMv2_3160_5_23
Type: CAZyme
Location: 20482 - 22764 (-)
Gene ID: HRGMv2_3160_5_24
Type: pfam
Location: 22754 - 23191 (-)
Gene ID: HRGMv2_3160_5_25
Type: CAZyme
Location: 23590 - 25935 (+)
Gene ID: HRGMv2_3160_5_26
Type: pfam
Location: 26036 - 26557 (+)
Gene ID: HRGMv2_3160_5_27
Type: STP
Location: 26658 - 27626 (-)
Gene ID: HRGMv2_3160_5_28
Type: CAZyme
Location: 27652 - 29847 (-)
Gene ID: HRGMv2_3160_5_29
Type: CAZyme
Location: 29873 - 31285 (-)
Gene ID: HRGMv2_3160_5_30
Type: TC
Location: 31319 - 32221 (-)
Gene ID: HRGMv2_3160_5_31
Type: TC
Location: 32218 - 33099 (-)
Gene ID: HRGMv2_3160_5_32
Type: TC
Location: 33099 - 34388 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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