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Cluster: HRGMv2_3160_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3160_2 HRGMv2_3160_2_15 18315 20156 - GH5_4
CAZyme HRGMv2_3160_2 HRGMv2_3160_2_16 20170 21729 - GH5_4
TF HRGMv2_3160_2 HRGMv2_3160_2_17 21933 22676 + HTH_AraC | HTH_AraC
pfam HRGMv2_3160_2 HRGMv2_3160_2_18 22709 22867 + Rubredoxin
CAZyme HRGMv2_3160_2 HRGMv2_3160_2_19 23129 24907 + GH5_4
CAZyme HRGMv2_3160_2 HRGMv2_3160_2_20 25017 26489 - CBM91 | GH43_12
pfam HRGMv2_3160_2 HRGMv2_3160_2_21 27158 28630 - bPH_2 | bPH_2
NULL(UNKNOWN) HRGMv2_3160_2 HRGMv2_3160_2_22 28673 29116 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3160_2 HRGMv2_3160_2_23 29290 30648 + 2.A.25.1.4
Gene ID: HRGMv2_3160_2_15
Type: CAZyme
Location: 18315 - 20156 (-)
Gene ID: HRGMv2_3160_2_16
Type: CAZyme
Location: 20170 - 21729 (-)
Gene ID: HRGMv2_3160_2_17
Type: TF
Location: 21933 - 22676 (+)
Gene ID: HRGMv2_3160_2_18
Type: pfam
Location: 22709 - 22867 (+)
Gene ID: HRGMv2_3160_2_19
Type: CAZyme
Location: 23129 - 24907 (+)
Gene ID: HRGMv2_3160_2_20
Type: CAZyme
Location: 25017 - 26489 (-)
Gene ID: HRGMv2_3160_2_21
Type: pfam
Location: 27158 - 28630 (-)
Gene ID: HRGMv2_3160_2_22
Type:
Location: 28673 - 29116 (-)
Gene ID: HRGMv2_3160_2_23
Type: TC
Location: 29290 - 30648 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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