Cluster: HRGMv2_3158_CGC8
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3158
- CGC Family ID: CGCFAM_03457
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3158_19 | HRGMv2_3158_19_18 | 18361 | 19764 | + | 2.A.73.1.1 |
| NULL(UNKNOWN) | HRGMv2_3158_19 | HRGMv2_3158_19_19 | 19961 | 20569 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | HRGMv2_3158_19 | HRGMv2_3158_19_20 | 20574 | 21020 | - | Sigma70_r2 | Sigma70_r4_2 |
| CAZyme | HRGMv2_3158_19 | HRGMv2_3158_19_21 | 21282 | 22040 | + | CE4 |
Gene ID: HRGMv2_3158_19_18
Type: TC
Location: 18361 - 19764 (+)
Type: TC
Location: 18361 - 19764 (+)
Gene ID: HRGMv2_3158_19_19
Type:
Location: 19961 - 20569 (-)
Type:
Location: 19961 - 20569 (-)
Gene ID: HRGMv2_3158_19_20
Type: STP
Location: 20574 - 21020 (-)
Type: STP
Location: 20574 - 21020 (-)
Gene ID: HRGMv2_3158_19_21
Type: CAZyme
Location: 21282 - 22040 (+)
Type: CAZyme
Location: 21282 - 22040 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Pseudoscilispira
Species
Pseudoscilispira sp018369915
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.