Cluster: HRGMv2_3158_CGC7
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3158
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3158_14 | HRGMv2_3158_14_12 | 13766 | 14125 | + | 9.B.124.1.7 |
| pfam | HRGMv2_3158_14 | HRGMv2_3158_14_13 | 14214 | 15659 | - | Radical_SAM | SPASM | Fer4_12 |
| pfam | HRGMv2_3158_14 | HRGMv2_3158_14_14 | 15970 | 16623 | - | Hydrolase | HAD | HAD_2 |
| TC | HRGMv2_3158_14 | HRGMv2_3158_14_15 | 16968 | 18593 | + | 2.A.66.2.14 |
| peptidase | HRGMv2_3158_14 | HRGMv2_3158_14_16 | 18671 | 19909 | + | M29.UPW |
| CAZyme | HRGMv2_3158_14 | HRGMv2_3158_14_17 | 20317 | 21828 | - | CBM50 |
Gene ID: HRGMv2_3158_14_12
Type: TC
Location: 13766 - 14125 (+)
Type: TC
Location: 13766 - 14125 (+)
Gene ID: HRGMv2_3158_14_13
Type: pfam
Location: 14214 - 15659 (-)
Type: pfam
Location: 14214 - 15659 (-)
Gene ID: HRGMv2_3158_14_14
Type: pfam
Location: 15970 - 16623 (-)
Type: pfam
Location: 15970 - 16623 (-)
Gene ID: HRGMv2_3158_14_15
Type: TC
Location: 16968 - 18593 (+)
Type: TC
Location: 16968 - 18593 (+)
Gene ID: HRGMv2_3158_14_16
Type: peptidase
Location: 18671 - 19909 (+)
Type: peptidase
Location: 18671 - 19909 (+)
Gene ID: HRGMv2_3158_14_17
Type: CAZyme
Location: 20317 - 21828 (-)
Type: CAZyme
Location: 20317 - 21828 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Pseudoscilispira
Species
Pseudoscilispira sp018369915
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.