Cluster: HRGMv2_3158_CGC3
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3158
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3158_4 | HRGMv2_3158_4_6 | 6529 | 7509 | + | 9.B.146.1.6 |
| TC | HRGMv2_3158_4 | HRGMv2_3158_4_7 | 7574 | 8749 | + | 2.A.103.1.3 |
| CAZyme | HRGMv2_3158_4 | HRGMv2_3158_4_8 | 8770 | 10023 | + | GT28 |
Gene ID: HRGMv2_3158_4_6
Type: TC
Location: 6529 - 7509 (+)
Type: TC
Location: 6529 - 7509 (+)
Gene ID: HRGMv2_3158_4_7
Type: TC
Location: 7574 - 8749 (+)
Type: TC
Location: 7574 - 8749 (+)
Gene ID: HRGMv2_3158_4_8
Type: CAZyme
Location: 8770 - 10023 (+)
Type: CAZyme
Location: 8770 - 10023 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Pseudoscilispira
Species
Pseudoscilispira sp018369915
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3158_4_6 | vegetarian > vegan | 1.34656 | 0.00289 |