Cluster: HRGMv2_3132_CGC25
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3132
- CGC Family ID: CGCFAM_00989
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3132_49 | HRGMv2_3132_49_1 | 1328 | 3487 | - | GH65 |
| pfam | HRGMv2_3132_49 | HRGMv2_3132_49_2 | 3480 | 5279 | - | Glyco_hydro_125 |
| TF | HRGMv2_3132_49 | HRGMv2_3132_49_3 | 5465 | 6481 | + | LacI |
| TC | HRGMv2_3132_49 | HRGMv2_3132_49_4 | 6631 | 7920 | + | 3.A.1.1.41 |
| TC | HRGMv2_3132_49 | HRGMv2_3132_49_5 | 7983 | 8912 | + | 3.A.1.1.11 |
| TC | HRGMv2_3132_49 | HRGMv2_3132_49_6 | 8902 | 9729 | + | 3.A.1.1.36 |
| CAZyme | HRGMv2_3132_49 | HRGMv2_3132_49_7 | 9735 | 11732 | + | GH31_7 |
Gene ID: HRGMv2_3132_49_1
Type: CAZyme
Location: 1328 - 3487 (-)
Type: CAZyme
Location: 1328 - 3487 (-)
Gene ID: HRGMv2_3132_49_2
Type: pfam
Location: 3480 - 5279 (-)
Type: pfam
Location: 3480 - 5279 (-)
Gene ID: HRGMv2_3132_49_3
Type: TF
Location: 5465 - 6481 (+)
Type: TF
Location: 5465 - 6481 (+)
Gene ID: HRGMv2_3132_49_4
Type: TC
Location: 6631 - 7920 (+)
Type: TC
Location: 6631 - 7920 (+)
Gene ID: HRGMv2_3132_49_5
Type: TC
Location: 7983 - 8912 (+)
Type: TC
Location: 7983 - 8912 (+)
Gene ID: HRGMv2_3132_49_6
Type: TC
Location: 8902 - 9729 (+)
Type: TC
Location: 8902 - 9729 (+)
Gene ID: HRGMv2_3132_49_7
Type: CAZyme
Location: 9735 - 11732 (+)
Type: CAZyme
Location: 9735 - 11732 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruthenibacterium
Species
Ruthenibacterium sp018380115
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.