Cluster: HRGMv2_3130_CGC6
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3130
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3130_6 | HRGMv2_3130_6_50 | 53725 | 54801 | - | GT2 |
| STP | HRGMv2_3130_6 | HRGMv2_3130_6_51 | 54798 | 56108 | - | PIG-L |
| STP | HRGMv2_3130_6 | HRGMv2_3130_6_52 | 56331 | 57602 | + | Pyr_redox_2 |
| TC | HRGMv2_3130_6 | HRGMv2_3130_6_53 | 57595 | 59715 | + | 5.A.3.5.2 |
| TC | HRGMv2_3130_6 | HRGMv2_3130_6_54 | 59720 | 60229 | + | 5.A.3.5.1 |
Gene ID: HRGMv2_3130_6_50
Type: CAZyme
Location: 53725 - 54801 (-)
Type: CAZyme
Location: 53725 - 54801 (-)
Gene ID: HRGMv2_3130_6_51
Type: STP
Location: 54798 - 56108 (-)
Type: STP
Location: 54798 - 56108 (-)
Gene ID: HRGMv2_3130_6_52
Type: STP
Location: 56331 - 57602 (+)
Type: STP
Location: 56331 - 57602 (+)
Gene ID: HRGMv2_3130_6_53
Type: TC
Location: 57595 - 59715 (+)
Type: TC
Location: 57595 - 59715 (+)
Gene ID: HRGMv2_3130_6_54
Type: TC
Location: 59720 - 60229 (+)
Type: TC
Location: 59720 - 60229 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Avimicrobium
Species
Avimicrobium caecorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.