Cluster: HRGMv2_3130_CGC12
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3130
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3130_12 | HRGMv2_3130_12_101 | 112831 | 114600 | + | 3.A.1.135.5 |
| TC | HRGMv2_3130_12 | HRGMv2_3130_12_102 | 114597 | 116489 | + | 3.A.1.135.5 |
| pfam | HRGMv2_3130_12 | HRGMv2_3130_12_103 | 116754 | 117857 | + | Meth_synt_2 |
| CAZyme | HRGMv2_3130_12 | HRGMv2_3130_12_104 | 117937 | 119469 | - | GH79 |
| TC | HRGMv2_3130_12 | HRGMv2_3130_12_105 | 119527 | 122142 | - | 3.A.3.2.21 |
| TC | HRGMv2_3130_12 | HRGMv2_3130_12_106 | 122588 | 123142 | + | 2.A.107.1.2 |
Gene ID: HRGMv2_3130_12_101
Type: TC
Location: 112831 - 114600 (+)
Type: TC
Location: 112831 - 114600 (+)
Gene ID: HRGMv2_3130_12_102
Type: TC
Location: 114597 - 116489 (+)
Type: TC
Location: 114597 - 116489 (+)
Gene ID: HRGMv2_3130_12_103
Type: pfam
Location: 116754 - 117857 (+)
Type: pfam
Location: 116754 - 117857 (+)
Gene ID: HRGMv2_3130_12_104
Type: CAZyme
Location: 117937 - 119469 (-)
Type: CAZyme
Location: 117937 - 119469 (-)
Gene ID: HRGMv2_3130_12_105
Type: TC
Location: 119527 - 122142 (-)
Type: TC
Location: 119527 - 122142 (-)
Gene ID: HRGMv2_3130_12_106
Type: TC
Location: 122588 - 123142 (+)
Type: TC
Location: 122588 - 123142 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Avimicrobium
Species
Avimicrobium caecorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.