Cluster: HRGMv2_3130_CGC10
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3130
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3130_10 | HRGMv2_3130_10_119 | 129464 | 130051 | + | 9.B.156.3.1 |
| TC | HRGMv2_3130_10 | HRGMv2_3130_10_120 | 130041 | 130559 | + | 9.B.156.3.1 |
| pfam | HRGMv2_3130_10 | HRGMv2_3130_10_121 | 130637 | 131227 | + | Acetyltransf_1 | Acetyltransf_3 |
| TC | HRGMv2_3130_10 | HRGMv2_3130_10_122 | 131357 | 132013 | - | 1.C.113.1.4 |
| pfam | HRGMv2_3130_10 | HRGMv2_3130_10_123 | 132200 | 132802 | + | DUF1836 |
| peptidase | HRGMv2_3130_10 | HRGMv2_3130_10_124 | 132855 | 134294 | - | M17.UPW |
| CAZyme | HRGMv2_3130_10 | HRGMv2_3130_10_125 | 134390 | 135172 | - | CE4 |
Gene ID: HRGMv2_3130_10_119
Type: TC
Location: 129464 - 130051 (+)
Type: TC
Location: 129464 - 130051 (+)
Gene ID: HRGMv2_3130_10_120
Type: TC
Location: 130041 - 130559 (+)
Type: TC
Location: 130041 - 130559 (+)
Gene ID: HRGMv2_3130_10_121
Type: pfam
Location: 130637 - 131227 (+)
Type: pfam
Location: 130637 - 131227 (+)
Gene ID: HRGMv2_3130_10_122
Type: TC
Location: 131357 - 132013 (-)
Type: TC
Location: 131357 - 132013 (-)
Gene ID: HRGMv2_3130_10_123
Type: pfam
Location: 132200 - 132802 (+)
Type: pfam
Location: 132200 - 132802 (+)
Gene ID: HRGMv2_3130_10_124
Type: peptidase
Location: 132855 - 134294 (-)
Type: peptidase
Location: 132855 - 134294 (-)
Gene ID: HRGMv2_3130_10_125
Type: CAZyme
Location: 134390 - 135172 (-)
Type: CAZyme
Location: 134390 - 135172 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Avimicrobium
Species
Avimicrobium caecorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.