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Cluster: HRGMv2_3122_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3122_24 HRGMv2_3122_24_8 4553 5947 + 3.A.1.1.45
TC HRGMv2_3122_24 HRGMv2_3122_24_9 6037 6882 + 3.A.1.1.45
TC HRGMv2_3122_24 HRGMv2_3122_24_10 6882 7739 + 3.A.1.1.45
TF HRGMv2_3122_24 HRGMv2_3122_24_11 7782 8786 + LacI
CAZyme HRGMv2_3122_24 HRGMv2_3122_24_12 8824 10323 + GH77
CAZyme HRGMv2_3122_24 HRGMv2_3122_24_13 10337 12670 + GT35
pfam HRGMv2_3122_24 HRGMv2_3122_24_14 12923 14200 - Adenylsucc_synt
TC HRGMv2_3122_24 HRGMv2_3122_24_15 14355 14798 + 9.A.11.1.1
TC HRGMv2_3122_24 HRGMv2_3122_24_16 14810 15838 + 9.A.11.1.1
TC HRGMv2_3122_24 HRGMv2_3122_24_17 15838 16206 + 9.A.11.1.1
Gene ID: HRGMv2_3122_24_8
Type: TC
Location: 4553 - 5947 (+)
Gene ID: HRGMv2_3122_24_9
Type: TC
Location: 6037 - 6882 (+)
Gene ID: HRGMv2_3122_24_10
Type: TC
Location: 6882 - 7739 (+)
Gene ID: HRGMv2_3122_24_11
Type: TF
Location: 7782 - 8786 (+)
Gene ID: HRGMv2_3122_24_12
Type: CAZyme
Location: 8824 - 10323 (+)
Gene ID: HRGMv2_3122_24_13
Type: CAZyme
Location: 10337 - 12670 (+)
Gene ID: HRGMv2_3122_24_14
Type: pfam
Location: 12923 - 14200 (-)
Gene ID: HRGMv2_3122_24_15
Type: TC
Location: 14355 - 14798 (+)
Gene ID: HRGMv2_3122_24_16
Type: TC
Location: 14810 - 15838 (+)
Gene ID: HRGMv2_3122_24_17
Type: TC
Location: 15838 - 16206 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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