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Cluster: HRGMv2_3122_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3122_11 HRGMv2_3122_11_54 53544 54944 - 2.A.66.1.33
NULL(UNKNOWN) HRGMv2_3122_11 HRGMv2_3122_11_55 55121 55462 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_3122_11 HRGMv2_3122_11_56 55455 56306 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3122_11 HRGMv2_3122_11_57 56446 57102 + 9.B.18.1.2
pfam HRGMv2_3122_11 HRGMv2_3122_11_58 57115 58185 + Epimerase | Polysacc_synt_2 | RmlD_sub_bind | GDP_Man_Dehyd
pfam HRGMv2_3122_11 HRGMv2_3122_11_59 58182 58736 + dTDP_sugar_isom
CAZyme HRGMv2_3122_11 HRGMv2_3122_11_60 58733 59752 + GT8
CAZyme HRGMv2_3122_11 HRGMv2_3122_11_61 59749 60960 + GT4
CAZyme HRGMv2_3122_11 HRGMv2_3122_11_62 60957 62087 + GT4
Gene ID: HRGMv2_3122_11_54
Type: TC
Location: 53544 - 54944 (-)
Gene ID: HRGMv2_3122_11_55
Type:
Location: 55121 - 55462 (+)
Gene ID: HRGMv2_3122_11_56
Type:
Location: 55455 - 56306 (+)
Gene ID: HRGMv2_3122_11_57
Type: TC
Location: 56446 - 57102 (+)
Gene ID: HRGMv2_3122_11_58
Type: pfam
Location: 57115 - 58185 (+)
Gene ID: HRGMv2_3122_11_59
Type: pfam
Location: 58182 - 58736 (+)
Gene ID: HRGMv2_3122_11_60
Type: CAZyme
Location: 58733 - 59752 (+)
Gene ID: HRGMv2_3122_11_61
Type: CAZyme
Location: 59749 - 60960 (+)
Gene ID: HRGMv2_3122_11_62
Type: CAZyme
Location: 60957 - 62087 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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