Cluster: HRGMv2_3103_CGC35
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_3103
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3103_17 | HRGMv2_3103_17_9 | 9255 | 11093 | + | 3.A.1.106.14 |
| TC | HRGMv2_3103_17 | HRGMv2_3103_17_10 | 11080 | 12903 | + | 3.A.1.106.3 |
| pfam | HRGMv2_3103_17 | HRGMv2_3103_17_11 | 12921 | 13679 | + | Exo_endo_phos |
| CAZyme | HRGMv2_3103_17 | HRGMv2_3103_17_12 | 14057 | 15979 | + | CBM48 | GH13_9 |
| pfam | HRGMv2_3103_17 | HRGMv2_3103_17_13 | 15983 | 17161 | + | NTP_transferase | Hexapep_GlmU |
| pfam | HRGMv2_3103_17 | HRGMv2_3103_17_14 | 17206 | 18333 | + | NTP_transferase | Hexapep_GlmU |
| CAZyme | HRGMv2_3103_17 | HRGMv2_3103_17_15 | 18333 | 19778 | + | GT5 |
| CAZyme | HRGMv2_3103_17 | HRGMv2_3103_17_16 | 19872 | 21854 | + | GH13_39 |
| TC | HRGMv2_3103_17 | HRGMv2_3103_17_17 | 21951 | 23807 | - | 3.A.3.6.10 |
| STP | HRGMv2_3103_17 | HRGMv2_3103_17_18 | 23818 | 24036 | - | HMA |
| TF | HRGMv2_3103_17 | HRGMv2_3103_17_19 | 24081 | 24440 | - | HTH_5 |
| TC | HRGMv2_3103_17 | HRGMv2_3103_17_20 | 24635 | 26245 | - | 3.A.1.135.7 |
Gene ID: HRGMv2_3103_17_9
Type: TC
Location: 9255 - 11093 (+)
Type: TC
Location: 9255 - 11093 (+)
Gene ID: HRGMv2_3103_17_10
Type: TC
Location: 11080 - 12903 (+)
Type: TC
Location: 11080 - 12903 (+)
Gene ID: HRGMv2_3103_17_11
Type: pfam
Location: 12921 - 13679 (+)
Type: pfam
Location: 12921 - 13679 (+)
Gene ID: HRGMv2_3103_17_12
Type: CAZyme
Location: 14057 - 15979 (+)
Type: CAZyme
Location: 14057 - 15979 (+)
Gene ID: HRGMv2_3103_17_13
Type: pfam
Location: 15983 - 17161 (+)
Type: pfam
Location: 15983 - 17161 (+)
Gene ID: HRGMv2_3103_17_14
Type: pfam
Location: 17206 - 18333 (+)
Type: pfam
Location: 17206 - 18333 (+)
Gene ID: HRGMv2_3103_17_15
Type: CAZyme
Location: 18333 - 19778 (+)
Type: CAZyme
Location: 18333 - 19778 (+)
Gene ID: HRGMv2_3103_17_16
Type: CAZyme
Location: 19872 - 21854 (+)
Type: CAZyme
Location: 19872 - 21854 (+)
Gene ID: HRGMv2_3103_17_17
Type: TC
Location: 21951 - 23807 (-)
Type: TC
Location: 21951 - 23807 (-)
Gene ID: HRGMv2_3103_17_18
Type: STP
Location: 23818 - 24036 (-)
Type: STP
Location: 23818 - 24036 (-)
Gene ID: HRGMv2_3103_17_19
Type: TF
Location: 24081 - 24440 (-)
Type: TF
Location: 24081 - 24440 (-)
Gene ID: HRGMv2_3103_17_20
Type: TC
Location: 24635 - 26245 (-)
Type: TC
Location: 24635 - 26245 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
UBA866
Species
UBA866 sp900543295
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3103_17_11 | vegetarian > omnivore | 1.01342 | 0.01867 |
| HRGMv2_3103_17_11 | vegetarian > vegan | 1.09859 | 0.00224 |
| HRGMv2_3103_17_14 | vegetarian > vegan | 1.62195 | 0.00224 |
| HRGMv2_3103_17_19 | vegetarian > vegan | 1.07544 | 0.00224 |