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Cluster: HRGMv2_3103_CGC33

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3103_13 HRGMv2_3103_13_27 28159 28863 - 9.B.18.1.3
CAZyme HRGMv2_3103_13 HRGMv2_3103_13_28 28860 30095 - GT4
CAZyme HRGMv2_3103_13 HRGMv2_3103_13_29 30092 31207 - GT4
TC HRGMv2_3103_13 HRGMv2_3103_13_30 31204 32481 - 2.A.66.2.15
CAZyme HRGMv2_3103_13 HRGMv2_3103_13_31 32483 33565 - GH177
pfam HRGMv2_3103_13 HRGMv2_3103_13_32 33624 34361 - Hexapep | Hexapep_2 | Hexapep_2
TC HRGMv2_3103_13 HRGMv2_3103_13_33 34358 36259 - 9.B.18.2.1
CAZyme HRGMv2_3103_13 HRGMv2_3103_13_34 36508 40722 - GH85
Gene ID: HRGMv2_3103_13_27
Type: TC
Location: 28159 - 28863 (-)
Gene ID: HRGMv2_3103_13_28
Type: CAZyme
Location: 28860 - 30095 (-)
Gene ID: HRGMv2_3103_13_29
Type: CAZyme
Location: 30092 - 31207 (-)
Gene ID: HRGMv2_3103_13_30
Type: TC
Location: 31204 - 32481 (-)
Gene ID: HRGMv2_3103_13_31
Type: CAZyme
Location: 32483 - 33565 (-)
Gene ID: HRGMv2_3103_13_32
Type: pfam
Location: 33624 - 34361 (-)
Gene ID: HRGMv2_3103_13_33
Type: TC
Location: 34358 - 36259 (-)
Gene ID: HRGMv2_3103_13_34
Type: CAZyme
Location: 36508 - 40722 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
Ruminococcaceae
→
Genus
UBA866
→
Species
UBA866 sp900543295

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3103_13_28 vegetarian > vegan 17.65534 0.00224

🧭 Explore Read Mapping of CGC

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