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Cluster: HRGMv2_3103_CGC31

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3103_11 HRGMv2_3103_11_32 30387 31328 - GH18
pfam HRGMv2_3103_11 HRGMv2_3103_11_33 31538 32044 - Acetyltransf_1 | Acetyltransf_7 | Acetyltransf_10
CAZyme HRGMv2_3103_11 HRGMv2_3103_11_34 32214 34280 - GH3
CAZyme HRGMv2_3103_11 HRGMv2_3103_11_35 34413 36299 - GH20
STP HRGMv2_3103_11 HRGMv2_3103_11_36 36496 37275 + Fer4
NULL(UNKNOWN) HRGMv2_3103_11 HRGMv2_3103_11_37 37262 38665 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3103_11 HRGMv2_3103_11_38 38914 39936 + 9.A.11.1.1
pfam HRGMv2_3103_11 HRGMv2_3103_11_39 39936 40304 + SpoVAC_SpoVAEB
CAZyme HRGMv2_3103_11 HRGMv2_3103_11_40 40394 41362 - GH109
Gene ID: HRGMv2_3103_11_32
Type: CAZyme
Location: 30387 - 31328 (-)
Gene ID: HRGMv2_3103_11_33
Type: pfam
Location: 31538 - 32044 (-)
Gene ID: HRGMv2_3103_11_34
Type: CAZyme
Location: 32214 - 34280 (-)
Gene ID: HRGMv2_3103_11_35
Type: CAZyme
Location: 34413 - 36299 (-)
Gene ID: HRGMv2_3103_11_36
Type: STP
Location: 36496 - 37275 (+)
Gene ID: HRGMv2_3103_11_37
Type:
Location: 37262 - 38665 (-)
Gene ID: HRGMv2_3103_11_38
Type: TC
Location: 38914 - 39936 (+)
Gene ID: HRGMv2_3103_11_39
Type: pfam
Location: 39936 - 40304 (+)
Gene ID: HRGMv2_3103_11_40
Type: CAZyme
Location: 40394 - 41362 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
Ruminococcaceae
→
Genus
UBA866
→
Species
UBA866 sp900543295

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3103_11_36 vegetarian > vegan 2.18788 0.00224

🧭 Explore Read Mapping of CGC

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