Cluster: HRGMv2_3103_CGC16
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_3103
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3103_5 | HRGMv2_3103_5_39 | 40248 | 40754 | - | 3.A.1.26.5 |
| pfam | HRGMv2_3103_5 | HRGMv2_3103_5_40 | 40985 | 42295 | - | ThiC_Rad_SAM |
| CAZyme | HRGMv2_3103_5 | HRGMv2_3103_5_41 | 42598 | 43743 | - | GH25 |
| NULL(UNKNOWN) | HRGMv2_3103_5 | HRGMv2_3103_5_42 | 43976 | 44419 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | HRGMv2_3103_5 | HRGMv2_3103_5_43 | 44494 | 45015 | - | NUDIX |
| TC | HRGMv2_3103_5 | HRGMv2_3103_5_44 | 45012 | 46691 | - | 2.A.58.2.2 |
| peptidase | HRGMv2_3103_5 | HRGMv2_3103_5_45 | 47144 | 48595 | - | M20.UPC |
| pfam | HRGMv2_3103_5 | HRGMv2_3103_5_46 | 48654 | 49439 | - | Hydrolase | S6PP | Hydrolase_3 |
| CAZyme | HRGMv2_3103_5 | HRGMv2_3103_5_47 | 49796 | 51265 | + | GH77 |
| CAZyme | HRGMv2_3103_5 | HRGMv2_3103_5_48 | 51273 | 53654 | + | GT35 |
Gene ID: HRGMv2_3103_5_39
Type: TC
Location: 40248 - 40754 (-)
Type: TC
Location: 40248 - 40754 (-)
Gene ID: HRGMv2_3103_5_40
Type: pfam
Location: 40985 - 42295 (-)
Type: pfam
Location: 40985 - 42295 (-)
Gene ID: HRGMv2_3103_5_41
Type: CAZyme
Location: 42598 - 43743 (-)
Type: CAZyme
Location: 42598 - 43743 (-)
Gene ID: HRGMv2_3103_5_42
Type:
Location: 43976 - 44419 (-)
Type:
Location: 43976 - 44419 (-)
Gene ID: HRGMv2_3103_5_43
Type: STP
Location: 44494 - 45015 (-)
Type: STP
Location: 44494 - 45015 (-)
Gene ID: HRGMv2_3103_5_44
Type: TC
Location: 45012 - 46691 (-)
Type: TC
Location: 45012 - 46691 (-)
Gene ID: HRGMv2_3103_5_45
Type: peptidase
Location: 47144 - 48595 (-)
Type: peptidase
Location: 47144 - 48595 (-)
Gene ID: HRGMv2_3103_5_46
Type: pfam
Location: 48654 - 49439 (-)
Type: pfam
Location: 48654 - 49439 (-)
Gene ID: HRGMv2_3103_5_47
Type: CAZyme
Location: 49796 - 51265 (+)
Type: CAZyme
Location: 49796 - 51265 (+)
Gene ID: HRGMv2_3103_5_48
Type: CAZyme
Location: 51273 - 53654 (+)
Type: CAZyme
Location: 51273 - 53654 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
UBA866
Species
UBA866 sp900543295
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3103_5_40 | vegetarian > vegan | 1.44947 | 0.00224 |
| HRGMv2_3103_5_44 | vegetarian > omnivore | 1.30925 | 0.03825 |
| HRGMv2_3103_5_44 | vegetarian > vegan | 2.08096 | 0.00224 |
| HRGMv2_3103_5_45 | vegetarian > vegan | 2.03875 | 0.00224 |