Cluster: HRGMv2_3103_CGC12
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3103
- CGC Family ID: CGCFAM_00532
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3103_3 | HRGMv2_3103_3_136 | 117843 | 118748 | + | 3.A.1.124.3 |
| pfam | HRGMv2_3103_3 | HRGMv2_3103_3_137 | 118745 | 119962 | + | ABC2_membrane_2 |
| pfam | HRGMv2_3103_3 | HRGMv2_3103_3_138 | 119956 | 121362 | + | ABC2_membrane_2 | ABC2_membrane_4 | ABC2_membrane_5 |
| CAZyme | HRGMv2_3103_3 | HRGMv2_3103_3_139 | 121628 | 122650 | + | GT4 |
Gene ID: HRGMv2_3103_3_136
Type: TC
Location: 117843 - 118748 (+)
Type: TC
Location: 117843 - 118748 (+)
Gene ID: HRGMv2_3103_3_137
Type: pfam
Location: 118745 - 119962 (+)
Type: pfam
Location: 118745 - 119962 (+)
Gene ID: HRGMv2_3103_3_138
Type: pfam
Location: 119956 - 121362 (+)
Type: pfam
Location: 119956 - 121362 (+)
Gene ID: HRGMv2_3103_3_139
Type: CAZyme
Location: 121628 - 122650 (+)
Type: CAZyme
Location: 121628 - 122650 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
UBA866
Species
UBA866 sp900543295
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3103_3_136 | vegetarian > vegan | 1.04240 | 0.00224 |
| HRGMv2_3103_3_139 | vegetarian > vegan | 2.59863 | 0.00224 |