Cluster: HRGMv2_3101_CGC4
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3101
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3101_11 | HRGMv2_3101_11_4 | 3737 | 4831 | + | 3.A.1.132.4 |
| TC | HRGMv2_3101_11 | HRGMv2_3101_11_5 | 4834 | 5697 | + | 3.A.1.132.1 |
| pfam | HRGMv2_3101_11 | HRGMv2_3101_11_6 | 5716 | 7209 | + | ABC_transp_aux |
| pfam | HRGMv2_3101_11 | HRGMv2_3101_11_7 | 7226 | 8320 | + | DUF4340 | DUF4340 |
| CAZyme | HRGMv2_3101_11 | HRGMv2_3101_11_8 | 8464 | 9678 | + | GH3 |
| CAZyme | HRGMv2_3101_11 | HRGMv2_3101_11_9 | 9734 | 10768 | + | GT4 |
Gene ID: HRGMv2_3101_11_4
Type: TC
Location: 3737 - 4831 (+)
Type: TC
Location: 3737 - 4831 (+)
Gene ID: HRGMv2_3101_11_5
Type: TC
Location: 4834 - 5697 (+)
Type: TC
Location: 4834 - 5697 (+)
Gene ID: HRGMv2_3101_11_6
Type: pfam
Location: 5716 - 7209 (+)
Type: pfam
Location: 5716 - 7209 (+)
Gene ID: HRGMv2_3101_11_7
Type: pfam
Location: 7226 - 8320 (+)
Type: pfam
Location: 7226 - 8320 (+)
Gene ID: HRGMv2_3101_11_8
Type: CAZyme
Location: 8464 - 9678 (+)
Type: CAZyme
Location: 8464 - 9678 (+)
Gene ID: HRGMv2_3101_11_9
Type: CAZyme
Location: 9734 - 10768 (+)
Type: CAZyme
Location: 9734 - 10768 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger avicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.