Cluster: HRGMv2_3101_CGC29
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3101
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3101_170 | HRGMv2_3101_170_1 | 17 | 1465 | - | 2.A.50.2.1 |
| pfam | HRGMv2_3101_170 | HRGMv2_3101_170_2 | 1511 | 1879 | - | DUF2304 |
| CAZyme | HRGMv2_3101_170 | HRGMv2_3101_170_3 | 1876 | 2616 | - | GT2 |
| CAZyme | HRGMv2_3101_170 | HRGMv2_3101_170_4 | 2653 | 3879 | - | GT4 |
| pfam | HRGMv2_3101_170 | HRGMv2_3101_170_5 | 3883 | 5028 | - | Epimerase_2 |
| pfam | HRGMv2_3101_170 | HRGMv2_3101_170_6 | 5039 | 6223 | - | Epimerase | NAD_binding_4 | Polysacc_synt_C |
| TC | HRGMv2_3101_170 | HRGMv2_3101_170_7 | 6210 | 7262 | - | 9.B.18.2.1 |
Gene ID: HRGMv2_3101_170_1
Type: TC
Location: 17 - 1465 (-)
Type: TC
Location: 17 - 1465 (-)
Gene ID: HRGMv2_3101_170_2
Type: pfam
Location: 1511 - 1879 (-)
Type: pfam
Location: 1511 - 1879 (-)
Gene ID: HRGMv2_3101_170_3
Type: CAZyme
Location: 1876 - 2616 (-)
Type: CAZyme
Location: 1876 - 2616 (-)
Gene ID: HRGMv2_3101_170_4
Type: CAZyme
Location: 2653 - 3879 (-)
Type: CAZyme
Location: 2653 - 3879 (-)
Gene ID: HRGMv2_3101_170_5
Type: pfam
Location: 3883 - 5028 (-)
Type: pfam
Location: 3883 - 5028 (-)
Gene ID: HRGMv2_3101_170_6
Type: pfam
Location: 5039 - 6223 (-)
Type: pfam
Location: 5039 - 6223 (-)
Gene ID: HRGMv2_3101_170_7
Type: TC
Location: 6210 - 7262 (-)
Type: TC
Location: 6210 - 7262 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger avicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.