Cluster: HRGMv2_3101_CGC21
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3101
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3101_120 | HRGMv2_3101_120_12 | 10653 | 11318 | - | 3.A.1.115.2 |
| STP | HRGMv2_3101_120 | HRGMv2_3101_120_13 | 11285 | 11758 | - | Response_reg |
| TC | HRGMv2_3101_120 | HRGMv2_3101_120_14 | 11736 | 13145 | - | 2.A.66.1.37 |
| CAZyme | HRGMv2_3101_120 | HRGMv2_3101_120_15 | 13296 | 14813 | - | GT26 |
| pfam | HRGMv2_3101_120 | HRGMv2_3101_120_16 | 15373 | 15864 | + | N_methyl |
| CAZyme | HRGMv2_3101_120 | HRGMv2_3101_120_17 | 15959 | 18448 | + | GH31_2 |
| TC | HRGMv2_3101_120 | HRGMv2_3101_120_18 | 18476 | 19804 | + | 3.A.11.1.3 |
Gene ID: HRGMv2_3101_120_12
Type: TC
Location: 10653 - 11318 (-)
Type: TC
Location: 10653 - 11318 (-)
Gene ID: HRGMv2_3101_120_13
Type: STP
Location: 11285 - 11758 (-)
Type: STP
Location: 11285 - 11758 (-)
Gene ID: HRGMv2_3101_120_14
Type: TC
Location: 11736 - 13145 (-)
Type: TC
Location: 11736 - 13145 (-)
Gene ID: HRGMv2_3101_120_15
Type: CAZyme
Location: 13296 - 14813 (-)
Type: CAZyme
Location: 13296 - 14813 (-)
Gene ID: HRGMv2_3101_120_16
Type: pfam
Location: 15373 - 15864 (+)
Type: pfam
Location: 15373 - 15864 (+)
Gene ID: HRGMv2_3101_120_17
Type: CAZyme
Location: 15959 - 18448 (+)
Type: CAZyme
Location: 15959 - 18448 (+)
Gene ID: HRGMv2_3101_120_18
Type: TC
Location: 18476 - 19804 (+)
Type: TC
Location: 18476 - 19804 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger avicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.