Cluster: HRGMv2_3101_CGC12
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3101
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3101_44 | HRGMv2_3101_44_7 | 6130 | 6984 | + | 3.A.1.1.23 |
| TC | HRGMv2_3101_44 | HRGMv2_3101_44_8 | 7002 | 7799 | + | 3.A.1.1.34 |
| NULL(UNKNOWN) | HRGMv2_3101_44 | HRGMv2_3101_44_9 | 7818 | 8246 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_3101_44 | HRGMv2_3101_44_10 | 8346 | 8762 | + | Aldo_ket_red |
| CAZyme | HRGMv2_3101_44 | HRGMv2_3101_44_11 | 8836 | 10251 | - | GH43_35 |
| CAZyme | HRGMv2_3101_44 | HRGMv2_3101_44_12 | 10248 | 11015 | - | CE20 |
Gene ID: HRGMv2_3101_44_7
Type: TC
Location: 6130 - 6984 (+)
Type: TC
Location: 6130 - 6984 (+)
Gene ID: HRGMv2_3101_44_8
Type: TC
Location: 7002 - 7799 (+)
Type: TC
Location: 7002 - 7799 (+)
Gene ID: HRGMv2_3101_44_9
Type:
Location: 7818 - 8246 (+)
Type:
Location: 7818 - 8246 (+)
Gene ID: HRGMv2_3101_44_10
Type: pfam
Location: 8346 - 8762 (+)
Type: pfam
Location: 8346 - 8762 (+)
Gene ID: HRGMv2_3101_44_11
Type: CAZyme
Location: 8836 - 10251 (-)
Type: CAZyme
Location: 8836 - 10251 (-)
Gene ID: HRGMv2_3101_44_12
Type: CAZyme
Location: 10248 - 11015 (-)
Type: CAZyme
Location: 10248 - 11015 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger avicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.