Cluster: HRGMv2_3081_CGC8
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3081
- CGC Family ID: CGCFAM_02741
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3081_6 | HRGMv2_3081_6_16 | 17937 | 20330 | - | GH94 |
| pfam | HRGMv2_3081_6 | HRGMv2_3081_6_17 | 20723 | 21241 | - | Ribosomal_S30AE | Ribosom_S30AE_C |
| TC | HRGMv2_3081_6 | HRGMv2_3081_6_18 | 21657 | 22754 | + | 3.A.1.11.7 |
| TC | HRGMv2_3081_6 | HRGMv2_3081_6_19 | 22741 | 23550 | + | 3.A.1.11.8 |
| TC | HRGMv2_3081_6 | HRGMv2_3081_6_20 | 23566 | 24375 | + | 3.A.1.11.8 |
| TC | HRGMv2_3081_6 | HRGMv2_3081_6_21 | 24372 | 25655 | + | 3.A.1.11.7 |
| STP | HRGMv2_3081_6 | HRGMv2_3081_6_22 | 25821 | 27581 | + | Peptidase_M23 |
| NULL(UNKNOWN) | HRGMv2_3081_6 | HRGMv2_3081_6_23 | 27750 | 28481 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3081_6 | HRGMv2_3081_6_24 | 28602 | 28865 | - | 8.A.8.1.4 |
| pfam | HRGMv2_3081_6 | HRGMv2_3081_6_25 | 29447 | 30400 | + | Prok-RING_1 |
| CAZyme | HRGMv2_3081_6 | HRGMv2_3081_6_26 | 30452 | 31456 | + | GT2 |
| NULL(UNKNOWN) | HRGMv2_3081_6 | HRGMv2_3081_6_27 | 31453 | 33369 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_3081_6 | HRGMv2_3081_6_28 | 33383 | 35779 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3081_6 | HRGMv2_3081_6_29 | 35795 | 37141 | + | 2.A.38.4.1 |
Gene ID: HRGMv2_3081_6_16
Type: CAZyme
Location: 17937 - 20330 (-)
Type: CAZyme
Location: 17937 - 20330 (-)
Gene ID: HRGMv2_3081_6_17
Type: pfam
Location: 20723 - 21241 (-)
Type: pfam
Location: 20723 - 21241 (-)
Gene ID: HRGMv2_3081_6_18
Type: TC
Location: 21657 - 22754 (+)
Type: TC
Location: 21657 - 22754 (+)
Gene ID: HRGMv2_3081_6_19
Type: TC
Location: 22741 - 23550 (+)
Type: TC
Location: 22741 - 23550 (+)
Gene ID: HRGMv2_3081_6_20
Type: TC
Location: 23566 - 24375 (+)
Type: TC
Location: 23566 - 24375 (+)
Gene ID: HRGMv2_3081_6_21
Type: TC
Location: 24372 - 25655 (+)
Type: TC
Location: 24372 - 25655 (+)
Gene ID: HRGMv2_3081_6_22
Type: STP
Location: 25821 - 27581 (+)
Type: STP
Location: 25821 - 27581 (+)
Gene ID: HRGMv2_3081_6_23
Type:
Location: 27750 - 28481 (-)
Type:
Location: 27750 - 28481 (-)
Gene ID: HRGMv2_3081_6_24
Type: TC
Location: 28602 - 28865 (-)
Type: TC
Location: 28602 - 28865 (-)
Gene ID: HRGMv2_3081_6_25
Type: pfam
Location: 29447 - 30400 (+)
Type: pfam
Location: 29447 - 30400 (+)
Gene ID: HRGMv2_3081_6_26
Type: CAZyme
Location: 30452 - 31456 (+)
Type: CAZyme
Location: 30452 - 31456 (+)
Gene ID: HRGMv2_3081_6_27
Type:
Location: 31453 - 33369 (+)
Type:
Location: 31453 - 33369 (+)
Gene ID: HRGMv2_3081_6_28
Type:
Location: 33383 - 35779 (+)
Type:
Location: 33383 - 35779 (+)
Gene ID: HRGMv2_3081_6_29
Type: TC
Location: 35795 - 37141 (+)
Type: TC
Location: 35795 - 37141 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
CAG-115
Species
CAG-115 sp900768125
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.