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Cluster: HRGMv2_3039_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3039_52 HRGMv2_3039_52_2 1188 1892 - 3.A.1.122.7
pfam HRGMv2_3039_52 HRGMv2_3039_52_3 1981 2826 - DUF4130
NULL(UNKNOWN) HRGMv2_3039_52 HRGMv2_3039_52_4 2805 4121 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_3039_52 HRGMv2_3039_52_5 4370 6769 + GH94
pfam HRGMv2_3039_52 HRGMv2_3039_52_6 6785 8203 + PGM_PMM_IV | PGM_PMM_I | PGM_PMM_II | PGM_PMM_III
STP HRGMv2_3039_52 HRGMv2_3039_52_7 8386 9681 + SBP_bac_1
TC HRGMv2_3039_52 HRGMv2_3039_52_8 9757 10692 + 3.A.1.1.4
TC HRGMv2_3039_52 HRGMv2_3039_52_9 10712 11554 + 3.A.1.1.18
pfam HRGMv2_3039_52 HRGMv2_3039_52_10 11587 13425 - GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH
TC HRGMv2_3039_52 HRGMv2_3039_52_11 13498 13761 - 8.A.8.1.4
Gene ID: HRGMv2_3039_52_2
Type: TC
Location: 1188 - 1892 (-)
Gene ID: HRGMv2_3039_52_3
Type: pfam
Location: 1981 - 2826 (-)
Gene ID: HRGMv2_3039_52_4
Type:
Location: 2805 - 4121 (-)
Gene ID: HRGMv2_3039_52_5
Type: CAZyme
Location: 4370 - 6769 (+)
Gene ID: HRGMv2_3039_52_6
Type: pfam
Location: 6785 - 8203 (+)
Gene ID: HRGMv2_3039_52_7
Type: STP
Location: 8386 - 9681 (+)
Gene ID: HRGMv2_3039_52_8
Type: TC
Location: 9757 - 10692 (+)
Gene ID: HRGMv2_3039_52_9
Type: TC
Location: 10712 - 11554 (+)
Gene ID: HRGMv2_3039_52_10
Type: pfam
Location: 11587 - 13425 (-)
Gene ID: HRGMv2_3039_52_11
Type: TC
Location: 13498 - 13761 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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