Cluster: HRGMv2_3018_CGC7
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_3018
- CGC Family ID: CGCFAM_00006
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3018_2 | HRGMv2_3018_2_186 | 204121 | 204864 | + | 8.A.3.2.3 |
| TC | HRGMv2_3018_2 | HRGMv2_3018_2_187 | 204857 | 205576 | + | 8.A.3.2.1 |
| TC | HRGMv2_3018_2 | HRGMv2_3018_2_188 | 205617 | 207113 | + | 9.B.18.1.2 |
| CAZyme | HRGMv2_3018_2 | HRGMv2_3018_2_189 | 207232 | 208350 | + | GT4 |
| CAZyme | HRGMv2_3018_2 | HRGMv2_3018_2_190 | 208351 | 209433 | + | GT4 |
| CAZyme | HRGMv2_3018_2 | HRGMv2_3018_2_191 | 209768 | 210820 | + | GT2 |
| pfam | HRGMv2_3018_2 | HRGMv2_3018_2_192 | 210847 | 211578 | + | Hexapep | Hexapep_2 |
| pfam | HRGMv2_3018_2 | HRGMv2_3018_2_193 | 211584 | 212705 | + | PS_pyruv_trans |
| CAZyme | HRGMv2_3018_2 | HRGMv2_3018_2_194 | 212741 | 213676 | + | GT101 |
| NULL(UNKNOWN) | HRGMv2_3018_2 | HRGMv2_3018_2_195 | 213699 | 214907 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3018_2 | HRGMv2_3018_2_196 | 214891 | 216993 | + | GT2 |
| NULL(UNKNOWN) | HRGMv2_3018_2 | HRGMv2_3018_2_197 | 217011 | 218252 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3018_2 | HRGMv2_3018_2_198 | 218276 | 219808 | + | 2.A.66.1.40 |
Gene ID: HRGMv2_3018_2_186
Type: TC
Location: 204121 - 204864 (+)
Type: TC
Location: 204121 - 204864 (+)
Gene ID: HRGMv2_3018_2_187
Type: TC
Location: 204857 - 205576 (+)
Type: TC
Location: 204857 - 205576 (+)
Gene ID: HRGMv2_3018_2_188
Type: TC
Location: 205617 - 207113 (+)
Type: TC
Location: 205617 - 207113 (+)
Gene ID: HRGMv2_3018_2_189
Type: CAZyme
Location: 207232 - 208350 (+)
Type: CAZyme
Location: 207232 - 208350 (+)
Gene ID: HRGMv2_3018_2_190
Type: CAZyme
Location: 208351 - 209433 (+)
Type: CAZyme
Location: 208351 - 209433 (+)
Gene ID: HRGMv2_3018_2_191
Type: CAZyme
Location: 209768 - 210820 (+)
Type: CAZyme
Location: 209768 - 210820 (+)
Gene ID: HRGMv2_3018_2_192
Type: pfam
Location: 210847 - 211578 (+)
Type: pfam
Location: 210847 - 211578 (+)
Gene ID: HRGMv2_3018_2_193
Type: pfam
Location: 211584 - 212705 (+)
Type: pfam
Location: 211584 - 212705 (+)
Gene ID: HRGMv2_3018_2_194
Type: CAZyme
Location: 212741 - 213676 (+)
Type: CAZyme
Location: 212741 - 213676 (+)
Gene ID: HRGMv2_3018_2_195
Type:
Location: 213699 - 214907 (+)
Type:
Location: 213699 - 214907 (+)
Gene ID: HRGMv2_3018_2_196
Type: CAZyme
Location: 214891 - 216993 (+)
Type: CAZyme
Location: 214891 - 216993 (+)
Gene ID: HRGMv2_3018_2_197
Type:
Location: 217011 - 218252 (+)
Type:
Location: 217011 - 218252 (+)
Gene ID: HRGMv2_3018_2_198
Type: TC
Location: 218276 - 219808 (+)
Type: TC
Location: 218276 - 219808 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Scybalenecus
Species
Scybalenecus sp900540085
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.