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Cluster: HRGMv2_3017_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3017_17 HRGMv2_3017_17_18 19205 19723 + 2.A.56.1.3
TC HRGMv2_3017_17 HRGMv2_3017_17_19 19720 20997 + 2.A.56.1.6
TC HRGMv2_3017_17 HRGMv2_3017_17_20 21060 22091 + 2.A.56.1.6
pfam HRGMv2_3017_17 HRGMv2_3017_17_21 22154 22933 + HpcH_HpaI
pfam HRGMv2_3017_17 HRGMv2_3017_17_22 23044 24459 + Polysacc_synt | Polysacc_synt_3
CAZyme HRGMv2_3017_17 HRGMv2_3017_17_23 24496 25620 - GT4
pfam HRGMv2_3017_17 HRGMv2_3017_17_24 25637 27025 - Polysacc_synt
CAZyme HRGMv2_3017_17 HRGMv2_3017_17_25 27022 27987 - GT2
CAZyme HRGMv2_3017_17 HRGMv2_3017_17_26 27984 29252 - GT4
pfam HRGMv2_3017_17 HRGMv2_3017_17_27 29258 30424 - Glycos_transf_1 | Glyco_trans_1_2 | Glyco_trans_1_4
NULL(UNKNOWN) HRGMv2_3017_17 HRGMv2_3017_17_28 30429 31685 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_3017_17 HRGMv2_3017_17_29 31682 32788 - GT4
CAZyme HRGMv2_3017_17 HRGMv2_3017_17_30 32785 34014 - GT4
pfam HRGMv2_3017_17 HRGMv2_3017_17_31 34042 34911 - 3Beta_HSD | Epimerase | RmlD_sub_bind | NAD_binding_4
TC HRGMv2_3017_17 HRGMv2_3017_17_32 34908 35513 - 9.B.18.1.1
pfam HRGMv2_3017_17 HRGMv2_3017_17_33 35725 39294 + SMC_N | SMC_hinge | AAA_15 | AAA_23
TC HRGMv2_3017_17 HRGMv2_3017_17_34 39457 40362 + 3.A.5.1.1
Gene ID: HRGMv2_3017_17_18
Type: TC
Location: 19205 - 19723 (+)
Gene ID: HRGMv2_3017_17_19
Type: TC
Location: 19720 - 20997 (+)
Gene ID: HRGMv2_3017_17_20
Type: TC
Location: 21060 - 22091 (+)
Gene ID: HRGMv2_3017_17_21
Type: pfam
Location: 22154 - 22933 (+)
Gene ID: HRGMv2_3017_17_22
Type: pfam
Location: 23044 - 24459 (+)
Gene ID: HRGMv2_3017_17_23
Type: CAZyme
Location: 24496 - 25620 (-)
Gene ID: HRGMv2_3017_17_24
Type: pfam
Location: 25637 - 27025 (-)
Gene ID: HRGMv2_3017_17_25
Type: CAZyme
Location: 27022 - 27987 (-)
Gene ID: HRGMv2_3017_17_26
Type: CAZyme
Location: 27984 - 29252 (-)
Gene ID: HRGMv2_3017_17_27
Type: pfam
Location: 29258 - 30424 (-)
Gene ID: HRGMv2_3017_17_28
Type:
Location: 30429 - 31685 (-)
Gene ID: HRGMv2_3017_17_29
Type: CAZyme
Location: 31682 - 32788 (-)
Gene ID: HRGMv2_3017_17_30
Type: CAZyme
Location: 32785 - 34014 (-)
Gene ID: HRGMv2_3017_17_31
Type: pfam
Location: 34042 - 34911 (-)
Gene ID: HRGMv2_3017_17_32
Type: TC
Location: 34908 - 35513 (-)
Gene ID: HRGMv2_3017_17_33
Type: pfam
Location: 35725 - 39294 (+)
Gene ID: HRGMv2_3017_17_34
Type: TC
Location: 39457 - 40362 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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