dbCAN Logo

Cluster: HRGMv2_3007_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3007_6 HRGMv2_3007_6_1 3 1109 + GT2
CAZyme HRGMv2_3007_6 HRGMv2_3007_6_2 1099 2115 + GT2
pfam HRGMv2_3007_6 HRGMv2_3007_6_3 2322 3110 + Glycos_transf_2
CAZyme HRGMv2_3007_6 HRGMv2_3007_6_4 3140 4321 + GT2
pfam HRGMv2_3007_6 HRGMv2_3007_6_5 4364 5479 + PS_pyruv_trans
CAZyme HRGMv2_3007_6 HRGMv2_3007_6_6 5466 6593 + GT2
pfam HRGMv2_3007_6 HRGMv2_3007_6_7 6581 7354 + ABC2_membrane
TC HRGMv2_3007_6 HRGMv2_3007_6_8 7364 8113 + 3.A.1.103.5
TC HRGMv2_3007_6 HRGMv2_3007_6_9 8114 9535 + 9.B.18.1.1
CAZyme HRGMv2_3007_6 HRGMv2_3007_6_10 9532 10650 + GT4
Gene ID: HRGMv2_3007_6_1
Type: CAZyme
Location: 3 - 1109 (+)
Gene ID: HRGMv2_3007_6_2
Type: CAZyme
Location: 1099 - 2115 (+)
Gene ID: HRGMv2_3007_6_3
Type: pfam
Location: 2322 - 3110 (+)
Gene ID: HRGMv2_3007_6_4
Type: CAZyme
Location: 3140 - 4321 (+)
Gene ID: HRGMv2_3007_6_5
Type: pfam
Location: 4364 - 5479 (+)
Gene ID: HRGMv2_3007_6_6
Type: CAZyme
Location: 5466 - 6593 (+)
Gene ID: HRGMv2_3007_6_7
Type: pfam
Location: 6581 - 7354 (+)
Gene ID: HRGMv2_3007_6_8
Type: TC
Location: 7364 - 8113 (+)
Gene ID: HRGMv2_3007_6_9
Type: TC
Location: 8114 - 9535 (+)
Gene ID: HRGMv2_3007_6_10
Type: CAZyme
Location: 9532 - 10650 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
Oscillospiraceae
→
Genus
Limivicinus
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3007_6_8 vegan > omnivore 2.71100 0.04492
HRGMv2_3007_6_8 vegetarian > omnivore 2.54670 0.00141

🧭 Explore Read Mapping of CGC

← Back to Cluster List