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Cluster: HRGMv2_3007_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3007_4 HRGMv2_3007_4_47 46455 47279 - 3.D.6.1.3
TC HRGMv2_3007_4 HRGMv2_3007_4_48 47298 47882 - 3.D.6.1.2
TC HRGMv2_3007_4 HRGMv2_3007_4_49 47882 48574 - 3.D.6.1.2
pfam HRGMv2_3007_4 HRGMv2_3007_4_50 48588 49127 - FMN_bind
TC HRGMv2_3007_4 HRGMv2_3007_4_51 49127 50173 - 3.D.6.1.2
TC HRGMv2_3007_4 HRGMv2_3007_4_52 50173 51537 - 3.D.6.1.2
CAZyme HRGMv2_3007_4 HRGMv2_3007_4_53 51902 53881 + CBM48 | GH13_9
Gene ID: HRGMv2_3007_4_47
Type: TC
Location: 46455 - 47279 (-)
Gene ID: HRGMv2_3007_4_48
Type: TC
Location: 47298 - 47882 (-)
Gene ID: HRGMv2_3007_4_49
Type: TC
Location: 47882 - 48574 (-)
Gene ID: HRGMv2_3007_4_50
Type: pfam
Location: 48588 - 49127 (-)
Gene ID: HRGMv2_3007_4_51
Type: TC
Location: 49127 - 50173 (-)
Gene ID: HRGMv2_3007_4_52
Type: TC
Location: 50173 - 51537 (-)
Gene ID: HRGMv2_3007_4_53
Type: CAZyme
Location: 51902 - 53881 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
Oscillospiraceae
→
Genus
Limivicinus
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3007_4_49 vegan > omnivore 1.24110 0.04492
HRGMv2_3007_4_49 vegetarian > omnivore 1.76662 0.00141
HRGMv2_3007_4_52 vegetarian > omnivore 1.32506 0.00141

🧭 Explore Read Mapping of CGC

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