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Cluster: HRGMv2_3007_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3007_2 HRGMv2_3007_2_65 61106 62866 - 2.A.58.2.2
STP HRGMv2_3007_2 HRGMv2_3007_2_66 63023 63805 - Fer4
peptidase HRGMv2_3007_2 HRGMv2_3007_2_67 63961 64926 - M19.UPW
TC HRGMv2_3007_2 HRGMv2_3007_2_68 64919 67060 - 2.A.53.4.2
TC HRGMv2_3007_2 HRGMv2_3007_2_69 67132 68502 - 2.A.66.1.28
pfam HRGMv2_3007_2 HRGMv2_3007_2_70 68743 70326 + PMT_2
CAZyme HRGMv2_3007_2 HRGMv2_3007_2_71 70326 71246 + GT2
pfam HRGMv2_3007_2 HRGMv2_3007_2_72 71243 71683 + GtrA_DPMS_TM
NULL(UNKNOWN) HRGMv2_3007_2 HRGMv2_3007_2_73 71786 73264 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3007_2 HRGMv2_3007_2_74 73275 74735 - 2.A.50.2.1
Gene ID: HRGMv2_3007_2_65
Type: TC
Location: 61106 - 62866 (-)
Gene ID: HRGMv2_3007_2_66
Type: STP
Location: 63023 - 63805 (-)
Gene ID: HRGMv2_3007_2_67
Type: peptidase
Location: 63961 - 64926 (-)
Gene ID: HRGMv2_3007_2_68
Type: TC
Location: 64919 - 67060 (-)
Gene ID: HRGMv2_3007_2_69
Type: TC
Location: 67132 - 68502 (-)
Gene ID: HRGMv2_3007_2_70
Type: pfam
Location: 68743 - 70326 (+)
Gene ID: HRGMv2_3007_2_71
Type: CAZyme
Location: 70326 - 71246 (+)
Gene ID: HRGMv2_3007_2_72
Type: pfam
Location: 71243 - 71683 (+)
Gene ID: HRGMv2_3007_2_73
Type:
Location: 71786 - 73264 (-)
Gene ID: HRGMv2_3007_2_74
Type: TC
Location: 73275 - 74735 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
Oscillospiraceae
→
Genus
Limivicinus
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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