Cluster: HRGMv2_3007_CGC4
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3007
- CGC Family ID: CGCFAM_00688
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3007_1 | HRGMv2_3007_1_249 | 252325 | 253452 | + | 9.B.10.1.1 |
| pfam | HRGMv2_3007_1 | HRGMv2_3007_1_250 | 253445 | 254398 | + | DUF1980_C |
| pfam | HRGMv2_3007_1 | HRGMv2_3007_1_251 | 254487 | 255143 | + | Hydrolase | HAD | HAD_2 |
| CAZyme | HRGMv2_3007_1 | HRGMv2_3007_1_252 | 255256 | 256215 | + | GT2 |
Gene ID: HRGMv2_3007_1_249
Type: TC
Location: 252325 - 253452 (+)
Type: TC
Location: 252325 - 253452 (+)
Gene ID: HRGMv2_3007_1_250
Type: pfam
Location: 253445 - 254398 (+)
Type: pfam
Location: 253445 - 254398 (+)
Gene ID: HRGMv2_3007_1_251
Type: pfam
Location: 254487 - 255143 (+)
Type: pfam
Location: 254487 - 255143 (+)
Gene ID: HRGMv2_3007_1_252
Type: CAZyme
Location: 255256 - 256215 (+)
Type: CAZyme
Location: 255256 - 256215 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.