dbCAN Logo

Cluster: HRGMv2_3007_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3007_1 HRGMv2_3007_1_224 224304 226325 - 9.A.8.1.6
STP HRGMv2_3007_1 HRGMv2_3007_1_225 226322 226555 - FeoA
TC HRGMv2_3007_1 HRGMv2_3007_1_226 226713 227450 - 3.A.1.5.27
TC HRGMv2_3007_1 HRGMv2_3007_1_227 227465 228265 - 3.A.1.5.20
TC HRGMv2_3007_1 HRGMv2_3007_1_228 228277 229086 - 3.A.1.5.27
TC HRGMv2_3007_1 HRGMv2_3007_1_229 229093 230034 - 3.A.1.5.32
TC HRGMv2_3007_1 HRGMv2_3007_1_230 230089 231636 - 3.A.1.5.27
TF HRGMv2_3007_1 HRGMv2_3007_1_231 231776 232660 - HTH_1
TC HRGMv2_3007_1 HRGMv2_3007_1_232 232847 234382 + 2.A.21.2.5
CAZyme HRGMv2_3007_1 HRGMv2_3007_1_233 234528 236753 + CE4
Gene ID: HRGMv2_3007_1_224
Type: TC
Location: 224304 - 226325 (-)
Gene ID: HRGMv2_3007_1_225
Type: STP
Location: 226322 - 226555 (-)
Gene ID: HRGMv2_3007_1_226
Type: TC
Location: 226713 - 227450 (-)
Gene ID: HRGMv2_3007_1_227
Type: TC
Location: 227465 - 228265 (-)
Gene ID: HRGMv2_3007_1_228
Type: TC
Location: 228277 - 229086 (-)
Gene ID: HRGMv2_3007_1_229
Type: TC
Location: 229093 - 230034 (-)
Gene ID: HRGMv2_3007_1_230
Type: TC
Location: 230089 - 231636 (-)
Gene ID: HRGMv2_3007_1_231
Type: TF
Location: 231776 - 232660 (-)
Gene ID: HRGMv2_3007_1_232
Type: TC
Location: 232847 - 234382 (+)
Gene ID: HRGMv2_3007_1_233
Type: CAZyme
Location: 234528 - 236753 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
Oscillospiraceae
→
Genus
Limivicinus
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List