Cluster: HRGMv2_3007_CGC21
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3007
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3007_25 | HRGMv2_3007_25_11 | 8989 | 10344 | - | 2.A.22.5.3 |
| TF | HRGMv2_3007_25 | HRGMv2_3007_25_12 | 10458 | 11384 | + | HTH_1 |
| CAZyme | HRGMv2_3007_25 | HRGMv2_3007_25_13 | 11390 | 12163 | - | CE4 |
| TC | HRGMv2_3007_25 | HRGMv2_3007_25_14 | 12346 | 14106 | - | 3.A.1.135.5 |
| TC | HRGMv2_3007_25 | HRGMv2_3007_25_15 | 14103 | 15854 | - | 3.A.1.135.5 |
Gene ID: HRGMv2_3007_25_11
Type: TC
Location: 8989 - 10344 (-)
Type: TC
Location: 8989 - 10344 (-)
Gene ID: HRGMv2_3007_25_12
Type: TF
Location: 10458 - 11384 (+)
Type: TF
Location: 10458 - 11384 (+)
Gene ID: HRGMv2_3007_25_13
Type: CAZyme
Location: 11390 - 12163 (-)
Type: CAZyme
Location: 11390 - 12163 (-)
Gene ID: HRGMv2_3007_25_14
Type: TC
Location: 12346 - 14106 (-)
Type: TC
Location: 12346 - 14106 (-)
Gene ID: HRGMv2_3007_25_15
Type: TC
Location: 14103 - 15854 (-)
Type: TC
Location: 14103 - 15854 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.