Cluster: HRGMv2_3007_CGC20
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3007
- CGC Family ID: CGCFAM_06198
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3007_20 | HRGMv2_3007_20_18 | 17631 | 18377 | + | 3.A.1.25.5 |
| pfam | HRGMv2_3007_20 | HRGMv2_3007_20_19 | 18367 | 19287 | + | SUFBD_core |
| CAZyme | HRGMv2_3007_20 | HRGMv2_3007_20_20 | 19303 | 20601 | + | GH13 |
| NULL(UNKNOWN) | HRGMv2_3007_20 | HRGMv2_3007_20_21 | 20941 | 21525 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_3007_20 | HRGMv2_3007_20_22 | 21522 | 22346 | + | AbiEii |
| TC | HRGMv2_3007_20 | HRGMv2_3007_20_23 | 22684 | 24441 | - | 4.C.1.1.4 |
Gene ID: HRGMv2_3007_20_18
Type: TC
Location: 17631 - 18377 (+)
Type: TC
Location: 17631 - 18377 (+)
Gene ID: HRGMv2_3007_20_19
Type: pfam
Location: 18367 - 19287 (+)
Type: pfam
Location: 18367 - 19287 (+)
Gene ID: HRGMv2_3007_20_20
Type: CAZyme
Location: 19303 - 20601 (+)
Type: CAZyme
Location: 19303 - 20601 (+)
Gene ID: HRGMv2_3007_20_21
Type:
Location: 20941 - 21525 (+)
Type:
Location: 20941 - 21525 (+)
Gene ID: HRGMv2_3007_20_22
Type: pfam
Location: 21522 - 22346 (+)
Type: pfam
Location: 21522 - 22346 (+)
Gene ID: HRGMv2_3007_20_23
Type: TC
Location: 22684 - 24441 (-)
Type: TC
Location: 22684 - 24441 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3007_20_23 | vegetarian > vegan | 1.05332 | 0.00029 |