Cluster: HRGMv2_3007_CGC18
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_3007
- CGC Family ID: CGCFAM_00005
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3007_15 | HRGMv2_3007_15_9 | 8844 | 9269 | - | GT2 |
| CAZyme | HRGMv2_3007_15 | HRGMv2_3007_15_10 | 9309 | 10481 | - | GT4 |
| CAZyme | HRGMv2_3007_15 | HRGMv2_3007_15_11 | 10478 | 11674 | - | GT4 |
| pfam | HRGMv2_3007_15 | HRGMv2_3007_15_12 | 11693 | 12979 | - | Glyco_trans_1_2 |
| CAZyme | HRGMv2_3007_15 | HRGMv2_3007_15_13 | 13067 | 13858 | - | GT2 |
| TC | HRGMv2_3007_15 | HRGMv2_3007_15_14 | 13851 | 15290 | - | 9.B.18.1.3 |
Gene ID: HRGMv2_3007_15_9
Type: CAZyme
Location: 8844 - 9269 (-)
Type: CAZyme
Location: 8844 - 9269 (-)
Gene ID: HRGMv2_3007_15_10
Type: CAZyme
Location: 9309 - 10481 (-)
Type: CAZyme
Location: 9309 - 10481 (-)
Gene ID: HRGMv2_3007_15_11
Type: CAZyme
Location: 10478 - 11674 (-)
Type: CAZyme
Location: 10478 - 11674 (-)
Gene ID: HRGMv2_3007_15_12
Type: pfam
Location: 11693 - 12979 (-)
Type: pfam
Location: 11693 - 12979 (-)
Gene ID: HRGMv2_3007_15_13
Type: CAZyme
Location: 13067 - 13858 (-)
Type: CAZyme
Location: 13067 - 13858 (-)
Gene ID: HRGMv2_3007_15_14
Type: TC
Location: 13851 - 15290 (-)
Type: TC
Location: 13851 - 15290 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.