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Cluster: HRGMv2_3007_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3007_7 HRGMv2_3007_7_73 82938 83552 + 9.B.18.1.2
pfam HRGMv2_3007_7 HRGMv2_3007_7_74 83549 84424 + 3Beta_HSD | Epimerase | RmlD_sub_bind | NAD_binding_4
CAZyme HRGMv2_3007_7 HRGMv2_3007_7_75 84421 85641 + GT4
pfam HRGMv2_3007_7 HRGMv2_3007_7_76 85589 86878 + Epimerase | Polysacc_synt_C
pfam HRGMv2_3007_7 HRGMv2_3007_7_77 86881 88059 + Epimerase_2
CAZyme HRGMv2_3007_7 HRGMv2_3007_7_78 88059 89261 + GT4
pfam HRGMv2_3007_7 HRGMv2_3007_7_79 89293 90480 + Glycos_transf_1 | Glyco_trans_1_2 | Glyco_trans_1_4
CAZyme HRGMv2_3007_7 HRGMv2_3007_7_80 90473 91597 + GT4
pfam HRGMv2_3007_7 HRGMv2_3007_7_81 91629 92207 + Hexapep
CAZyme HRGMv2_3007_7 HRGMv2_3007_7_82 92197 93198 + GT2
Gene ID: HRGMv2_3007_7_73
Type: TC
Location: 82938 - 83552 (+)
Gene ID: HRGMv2_3007_7_74
Type: pfam
Location: 83549 - 84424 (+)
Gene ID: HRGMv2_3007_7_75
Type: CAZyme
Location: 84421 - 85641 (+)
Gene ID: HRGMv2_3007_7_76
Type: pfam
Location: 85589 - 86878 (+)
Gene ID: HRGMv2_3007_7_77
Type: pfam
Location: 86881 - 88059 (+)
Gene ID: HRGMv2_3007_7_78
Type: CAZyme
Location: 88059 - 89261 (+)
Gene ID: HRGMv2_3007_7_79
Type: pfam
Location: 89293 - 90480 (+)
Gene ID: HRGMv2_3007_7_80
Type: CAZyme
Location: 90473 - 91597 (+)
Gene ID: HRGMv2_3007_7_81
Type: pfam
Location: 91629 - 92207 (+)
Gene ID: HRGMv2_3007_7_82
Type: CAZyme
Location: 92197 - 93198 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
Oscillospiraceae
→
Genus
Limivicinus
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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