Cluster: HRGMv2_3006_CGC9
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3006
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3006_4 | HRGMv2_3006_4_12 | 11257 | 13359 | + | GH151 |
| STP | HRGMv2_3006_4 | HRGMv2_3006_4_13 | 13389 | 14312 | + | PfkB |
| TC | HRGMv2_3006_4 | HRGMv2_3006_4_14 | 14468 | 14782 | + | 3.A.1.135.6 |
| pfam | HRGMv2_3006_4 | HRGMv2_3006_4_15 | 14839 | 15333 | - | DNA_binding_1 | Methyltransf_1N |
| TC | HRGMv2_3006_4 | HRGMv2_3006_4_16 | 15364 | 16023 | - | 2.A.38.4.4 |
| TC | HRGMv2_3006_4 | HRGMv2_3006_4_17 | 16057 | 17388 | - | 2.A.38.4.1 |
Gene ID: HRGMv2_3006_4_12
Type: CAZyme
Location: 11257 - 13359 (+)
Type: CAZyme
Location: 11257 - 13359 (+)
Gene ID: HRGMv2_3006_4_13
Type: STP
Location: 13389 - 14312 (+)
Type: STP
Location: 13389 - 14312 (+)
Gene ID: HRGMv2_3006_4_14
Type: TC
Location: 14468 - 14782 (+)
Type: TC
Location: 14468 - 14782 (+)
Gene ID: HRGMv2_3006_4_15
Type: pfam
Location: 14839 - 15333 (-)
Type: pfam
Location: 14839 - 15333 (-)
Gene ID: HRGMv2_3006_4_16
Type: TC
Location: 15364 - 16023 (-)
Type: TC
Location: 15364 - 16023 (-)
Gene ID: HRGMv2_3006_4_17
Type: TC
Location: 16057 - 17388 (-)
Type: TC
Location: 16057 - 17388 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp958427375
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3006_4_12 | vegetarian > omnivore | 2.10096 | 0.00038 |
| HRGMv2_3006_4_13 | vegetarian > omnivore | 1.76584 | 0.00038 |