Cluster: HRGMv2_3006_CGC22
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3006
- CGC Family ID: CGCFAM_00768
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3006_35 | HRGMv2_3006_35_1 | 3 | 227 | + | 3.A.1.2.12 |
| TC | HRGMv2_3006_35 | HRGMv2_3006_35_2 | 224 | 1378 | + | 3.A.1.2.17 |
| TC | HRGMv2_3006_35 | HRGMv2_3006_35_3 | 1378 | 2313 | + | 3.A.1.2.17 |
| pfam | HRGMv2_3006_35 | HRGMv2_3006_35_4 | 2486 | 3397 | + | Indigoidine_A |
| CAZyme | HRGMv2_3006_35 | HRGMv2_3006_35_5 | 3550 | 4539 | + | GT2 |
Gene ID: HRGMv2_3006_35_1
Type: TC
Location: 3 - 227 (+)
Type: TC
Location: 3 - 227 (+)
Gene ID: HRGMv2_3006_35_2
Type: TC
Location: 224 - 1378 (+)
Type: TC
Location: 224 - 1378 (+)
Gene ID: HRGMv2_3006_35_3
Type: TC
Location: 1378 - 2313 (+)
Type: TC
Location: 1378 - 2313 (+)
Gene ID: HRGMv2_3006_35_4
Type: pfam
Location: 2486 - 3397 (+)
Type: pfam
Location: 2486 - 3397 (+)
Gene ID: HRGMv2_3006_35_5
Type: CAZyme
Location: 3550 - 4539 (+)
Type: CAZyme
Location: 3550 - 4539 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp958427375
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.