Cluster: HRGMv2_3006_CGC20
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3006
- CGC Family ID: CGCFAM_00559
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3006_26 | HRGMv2_3006_26_8 | 9066 | 10103 | - | GT2 |
| pfam | HRGMv2_3006_26 | HRGMv2_3006_26_9 | 10108 | 10803 | - | DUF2461 |
| TC | HRGMv2_3006_26 | HRGMv2_3006_26_10 | 10992 | 12356 | + | 2.A.38.1.1 |
| TC | HRGMv2_3006_26 | HRGMv2_3006_26_11 | 12353 | 13795 | + | 2.A.38.1.3 |
| pfam | HRGMv2_3006_26 | HRGMv2_3006_26_12 | 13943 | 14239 | - | Thioredoxin_3 |
| TC | HRGMv2_3006_26 | HRGMv2_3006_26_13 | 14252 | 15250 | - | 2.A.119.1.3 |
Gene ID: HRGMv2_3006_26_8
Type: CAZyme
Location: 9066 - 10103 (-)
Type: CAZyme
Location: 9066 - 10103 (-)
Gene ID: HRGMv2_3006_26_9
Type: pfam
Location: 10108 - 10803 (-)
Type: pfam
Location: 10108 - 10803 (-)
Gene ID: HRGMv2_3006_26_10
Type: TC
Location: 10992 - 12356 (+)
Type: TC
Location: 10992 - 12356 (+)
Gene ID: HRGMv2_3006_26_11
Type: TC
Location: 12353 - 13795 (+)
Type: TC
Location: 12353 - 13795 (+)
Gene ID: HRGMv2_3006_26_12
Type: pfam
Location: 13943 - 14239 (-)
Type: pfam
Location: 13943 - 14239 (-)
Gene ID: HRGMv2_3006_26_13
Type: TC
Location: 14252 - 15250 (-)
Type: TC
Location: 14252 - 15250 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp958427375
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.