Cluster: HRGMv2_3006_CGC19
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3006
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3006_24 | HRGMv2_3006_24_12 | 9953 | 17029 | - | GH94 | GT84 |
| TF | HRGMv2_3006_24 | HRGMv2_3006_24_13 | 17212 | 17568 | + | HTH_11 |
| TC | HRGMv2_3006_24 | HRGMv2_3006_24_14 | 17571 | 18941 | + | 3.A.5.1.1 |
Gene ID: HRGMv2_3006_24_12
Type: CAZyme
Location: 9953 - 17029 (-)
Type: CAZyme
Location: 9953 - 17029 (-)
Gene ID: HRGMv2_3006_24_13
Type: TF
Location: 17212 - 17568 (+)
Type: TF
Location: 17212 - 17568 (+)
Gene ID: HRGMv2_3006_24_14
Type: TC
Location: 17571 - 18941 (+)
Type: TC
Location: 17571 - 18941 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp958427375
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3006_24_14 | vegetarian > vegan | 1.16582 | 0.00110 |