Cluster: HRGMv2_3006_CGC16
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3006
- CGC Family ID: CGCFAM_01354
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3006_11 | HRGMv2_3006_11_41 | 44035 | 44994 | - | GT2 |
| pfam | HRGMv2_3006_11 | HRGMv2_3006_11_42 | 45117 | 45773 | - | Hydrolase | HAD_2 |
| pfam | HRGMv2_3006_11 | HRGMv2_3006_11_43 | 45862 | 46815 | - | DUF1980_C |
| TC | HRGMv2_3006_11 | HRGMv2_3006_11_44 | 46808 | 47932 | - | 9.B.10.1.1 |
Gene ID: HRGMv2_3006_11_41
Type: CAZyme
Location: 44035 - 44994 (-)
Type: CAZyme
Location: 44035 - 44994 (-)
Gene ID: HRGMv2_3006_11_42
Type: pfam
Location: 45117 - 45773 (-)
Type: pfam
Location: 45117 - 45773 (-)
Gene ID: HRGMv2_3006_11_43
Type: pfam
Location: 45862 - 46815 (-)
Type: pfam
Location: 45862 - 46815 (-)
Gene ID: HRGMv2_3006_11_44
Type: TC
Location: 46808 - 47932 (-)
Type: TC
Location: 46808 - 47932 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp958427375
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3006_11_41 | vegan > omnivore | 1.06230 | 0.00566 |
| HRGMv2_3006_11_43 | vegetarian > omnivore | 1.95520 | 0.00038 |
| HRGMv2_3006_11_43 | vegetarian > vegan | 1.66425 | 0.00110 |