Cluster: HRGMv2_3006_CGC14
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3006
- CGC Family ID: CGCFAM_05703
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3006_7 | HRGMv2_3006_7_5 | 4112 | 5863 | + | 3.A.1.135.5 |
| TC | HRGMv2_3006_7 | HRGMv2_3006_7_6 | 5860 | 7629 | + | 3.A.1.135.5 |
| CAZyme | HRGMv2_3006_7 | HRGMv2_3006_7_7 | 7979 | 8749 | + | CE4 |
| TF | HRGMv2_3006_7 | HRGMv2_3006_7_8 | 8755 | 9678 | - | HTH_1 |
| TC | HRGMv2_3006_7 | HRGMv2_3006_7_9 | 9792 | 11147 | + | 2.A.22.5.3 |
Gene ID: HRGMv2_3006_7_5
Type: TC
Location: 4112 - 5863 (+)
Type: TC
Location: 4112 - 5863 (+)
Gene ID: HRGMv2_3006_7_6
Type: TC
Location: 5860 - 7629 (+)
Type: TC
Location: 5860 - 7629 (+)
Gene ID: HRGMv2_3006_7_7
Type: CAZyme
Location: 7979 - 8749 (+)
Type: CAZyme
Location: 7979 - 8749 (+)
Gene ID: HRGMv2_3006_7_8
Type: TF
Location: 8755 - 9678 (-)
Type: TF
Location: 8755 - 9678 (-)
Gene ID: HRGMv2_3006_7_9
Type: TC
Location: 9792 - 11147 (+)
Type: TC
Location: 9792 - 11147 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp958427375
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.