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Cluster: HRGMv2_3006_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3006_5 HRGMv2_3006_5_15 23924 24898 + 3.A.1.15.3
TC HRGMv2_3006_5 HRGMv2_3006_5_16 24898 25602 + 3.A.1.15.8
TC HRGMv2_3006_5 HRGMv2_3006_5_17 25599 26414 + 3.A.1.15.15
pfam HRGMv2_3006_5 HRGMv2_3006_5_18 26540 28117 + PEPCK_ATP
TC HRGMv2_3006_5 HRGMv2_3006_5_19 28190 29518 - 2.A.35.1.5
pfam HRGMv2_3006_5 HRGMv2_3006_5_20 29609 30601 - Asparaginase | Asparaginase_C
CAZyme HRGMv2_3006_5 HRGMv2_3006_5_21 30788 31567 + GT51
TC HRGMv2_3006_5 HRGMv2_3006_5_22 31764 33176 + 2.A.66.1.28
Gene ID: HRGMv2_3006_5_15
Type: TC
Location: 23924 - 24898 (+)
Gene ID: HRGMv2_3006_5_16
Type: TC
Location: 24898 - 25602 (+)
Gene ID: HRGMv2_3006_5_17
Type: TC
Location: 25599 - 26414 (+)
Gene ID: HRGMv2_3006_5_18
Type: pfam
Location: 26540 - 28117 (+)
Gene ID: HRGMv2_3006_5_19
Type: TC
Location: 28190 - 29518 (-)
Gene ID: HRGMv2_3006_5_20
Type: pfam
Location: 29609 - 30601 (-)
Gene ID: HRGMv2_3006_5_21
Type: CAZyme
Location: 30788 - 31567 (+)
Gene ID: HRGMv2_3006_5_22
Type: TC
Location: 31764 - 33176 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3006_5_19 vegetarian > vegan 1.31809 0.00110

🧭 Explore Read Mapping of CGC

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