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Cluster: HRGMv2_3006_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3006_1 HRGMv2_3006_1_33 34835 35836 - GT2
pfam HRGMv2_3006_1 HRGMv2_3006_1_34 35826 36404 - Hexapep
CAZyme HRGMv2_3006_1 HRGMv2_3006_1_35 36484 37578 - GT4
CAZyme HRGMv2_3006_1 HRGMv2_3006_1_36 37601 38788 - GT4
CAZyme HRGMv2_3006_1 HRGMv2_3006_1_37 38820 40022 - GT4
pfam HRGMv2_3006_1 HRGMv2_3006_1_38 40022 41200 - Epimerase_2
pfam HRGMv2_3006_1 HRGMv2_3006_1_39 41203 42492 - Epimerase | Polysacc_synt_C
CAZyme HRGMv2_3006_1 HRGMv2_3006_1_40 42440 43660 - GT4
pfam HRGMv2_3006_1 HRGMv2_3006_1_41 43657 44532 - 3Beta_HSD | Epimerase | RmlD_sub_bind | NAD_binding_4
TC HRGMv2_3006_1 HRGMv2_3006_1_42 44529 45143 - 9.B.18.1.2
Gene ID: HRGMv2_3006_1_33
Type: CAZyme
Location: 34835 - 35836 (-)
Gene ID: HRGMv2_3006_1_34
Type: pfam
Location: 35826 - 36404 (-)
Gene ID: HRGMv2_3006_1_35
Type: CAZyme
Location: 36484 - 37578 (-)
Gene ID: HRGMv2_3006_1_36
Type: CAZyme
Location: 37601 - 38788 (-)
Gene ID: HRGMv2_3006_1_37
Type: CAZyme
Location: 38820 - 40022 (-)
Gene ID: HRGMv2_3006_1_38
Type: pfam
Location: 40022 - 41200 (-)
Gene ID: HRGMv2_3006_1_39
Type: pfam
Location: 41203 - 42492 (-)
Gene ID: HRGMv2_3006_1_40
Type: CAZyme
Location: 42440 - 43660 (-)
Gene ID: HRGMv2_3006_1_41
Type: pfam
Location: 43657 - 44532 (-)
Gene ID: HRGMv2_3006_1_42
Type: TC
Location: 44529 - 45143 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3006_1_38 vegan > omnivore 1.11319 0.00566

🧭 Explore Read Mapping of CGC

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