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Cluster: HRGMv2_3005_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3005_9 HRGMv2_3005_9_18 13950 14786 + 3.A.1.149.1
pfam HRGMv2_3005_9 HRGMv2_3005_9_19 14790 15398 + ABC2_membrane_5
CAZyme HRGMv2_3005_9 HRGMv2_3005_9_20 15699 17606 - GH173
STP HRGMv2_3005_9 HRGMv2_3005_9_21 18041 21313 - TPR_2
pfam HRGMv2_3005_9 HRGMv2_3005_9_22 21596 21877 + Ribosomal_S6
TC HRGMv2_3005_9 HRGMv2_3005_9_23 21890 22312 + 3.A.7.19.1
pfam HRGMv2_3005_9 HRGMv2_3005_9_24 22343 22582 + Ribosomal_S18
TC HRGMv2_3005_9 HRGMv2_3005_9_25 22855 23337 + 1.A.22.1.3
Gene ID: HRGMv2_3005_9_18
Type: TC
Location: 13950 - 14786 (+)
Gene ID: HRGMv2_3005_9_19
Type: pfam
Location: 14790 - 15398 (+)
Gene ID: HRGMv2_3005_9_20
Type: CAZyme
Location: 15699 - 17606 (-)
Gene ID: HRGMv2_3005_9_21
Type: STP
Location: 18041 - 21313 (-)
Gene ID: HRGMv2_3005_9_22
Type: pfam
Location: 21596 - 21877 (+)
Gene ID: HRGMv2_3005_9_23
Type: TC
Location: 21890 - 22312 (+)
Gene ID: HRGMv2_3005_9_24
Type: pfam
Location: 22343 - 22582 (+)
Gene ID: HRGMv2_3005_9_25
Type: TC
Location: 22855 - 23337 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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